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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118416 (42 seq.)
>W1711097986
LTJE01000032
Bacteroidota
Weeksella sp. HMSC059D05 [LTJE]
204845
204927
+
Leu
TAG
[ENA]
¡û
>C171092556
CP019352
Bacteroidota
Lacinutrix venerupis DOK2-8 [CP019352]
3129559
3129475
-
Leu
TAG
-
¡û
>W131181227
ARNT01000013
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
37008
36924
-
Leu
TAG
[ENA]
¡û
>W131236217
AUMF01000008
Bacteroidota
Tenacibaculum ovolyticum DSM 18103 [AUMF]
76284
76200
-
Leu
TAG
[ENA]
¡û
>WENV180277163
OBHV01096511
[OBHV] metagenome; water
93
11
-
Leu
TAG
[ENA]
¢þ
>WENV181393106
OFRX01049343
[OFRX] seawater metagenome; seawater
183
265
+
Leu
TAG
[ENA]
¢þ
>WENV183058165
OLHN01011370
[OLHN] seawater metagenome; Sea water
891
809
-
Leu
TAG
[ENA]
¢þ
>WENV183621032
OOFT01002846
[OOFT] marine metagenome; sea ice
480
562
+
Leu
TAG
[ENA]
¢þ
>WENV183629482
OOGP01050586
[OOGP] marine metagenome; seawater
183
265
+
Leu
TAG
[ENA]
¢þ
>WENV183704057
PDWI01000014
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
205763
205681
-
Leu
TAG
[ENA]
¢þ
>WENV183718828
PDWJ01006796
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
5407
5489
+
Leu
TAG
[ENA]
¢þ
>WENV183727553
PJTP01000017
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
205177
205095
-
Leu
TAG
[ENA]
¢þ
>WENV170646780
JQIA01002958
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
2505
2421
-
Leu
TAG
[ENA]
¢þ
>WENV170822406
MDSY01039548
[MDSY] marine metagenome; seawater
2523
2607
+
Leu
TAG
[ENA]
¢þ
>WENV170822530
MDSY01041764
[MDSY] marine metagenome; seawater
4090
4006
-
Leu
TAG
[ENA]
¢þ
>WENV170822868
MDSY01047981
[MDSY] marine metagenome; seawater
1120
1036
-
Leu
TAG
[ENA]
¢þ
>WENV170825793
MDSY01100007
[MDSY] marine metagenome; seawater
807
889
+
Leu
TAG
[ENA]
¢þ
>WENV170928879
MDTG01141087
[MDTG] marine metagenome; seawater
23163
23244
+
Leu
TAG
[ENA]
¢þ
>C191210742
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
1912512
1912430
-
Leu
TAG
-
¡û
>W1911501296
OENB01000012
Bacteroidota
Tenacibaculum dicentrarchi TNO021 [OENB]
558524
558606
+
Leu
TAG
[ENA]
¡û
>W1911501356
OENC01000056
Bacteroidota
Tenacibaculum dicentrarchi type strain: TD3509 [OENC]
582789
582871
+
Leu
TAG
[ENA]
¡û
>W1911504336
OESZ01000001
Bacteroidota
Tenacibaculum dicentrarchi TDCHD05 [OESZ]
526340
526258
-
Leu
TAG
[ENA]
¡û
>W1810596578
QGGQ01000005
Bacteroidota
Maribacter polysiphoniae DSM 23514 [QGGQ]
180449
180531
+
Leu
TAG
[ENA]
¡û
>W1810724877
QOCC01000019
Bacteroidota
Tenacibaculum sp. E3R01 [QOCC]
713119
713201
+
Leu
TAG
[ENA]
¡û
>C10106860
CP002157
Bacteroidota
Maribacter sp. HTCC2170 [CP002157]
1032150
1032066
-
Leu
TAG
[Ensembl]
¡û
>C11111972
CP002825
Bacteroidota
Lacinutrix sp. 5H-3-7-4 [CP002825]
1542837
1542921
+
Leu
TAG
[Ensembl]
¡û
>W1511388595
JSWF01000044
Bacteroidota
Lacinutrix jangbogonensis PAMC 27137 [JSWF]
160067
159985
-
Leu
TAG
[ENA]
¡û
>C11123790
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
1195884
1195966
+
Leu
TAG
[Ensembl]
¡û
>W1511534132
JYNQ01000001
Bacteroidota
Lacinutrix sp. Hel_I_90 Hel_I_90 Hel_I _90 [JYNQ]
2663062
2663146
+
Leu
TAG
[ENA]
¡û
>W11170351
AFPK01000034
Bacteroidota
Ochrovirga pacifica S85 [AFPK]
37515
37599
+
Leu
TAG
[ENA]
¡û
>C161059110
CP013671
Bacteroidota
Tenacibaculum dicentrarchi AY7486TD [CP013671]
2634688
2634770
+
Leu
TAG
[Ensembl]
¡û
>W1610080947
BDCW01000036
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
35257
35173
-
Leu
TAG
[ENA]
¡û
>W1610503167
FLMR01000009
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
135316
135234
-
Leu
TAG
[ENA]
¡û
>W1610632961
LIQH01000020
Bacteroidota
Lacinutrix algicola [LIQH]
130256
130338
+
Leu
TAG
[ENA]
¡û
>W1710079598
BDCW01000036
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
35257
35173
-
Leu
TAG
[ENA]
¡û
>W1710496401
FLMR01000009
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
135316
135234
-
Leu
TAG
[ENA]
¡û
>W1710516835
FNCW01000002
Bacteroidota
Psychroflexus sediminis [FNCW]
153809
153891
+
Leu
TAG
[ENA]
¡û
>W1710534996
FNSF01000005
Bacteroidota
Tenacibaculum sp. MAR_2009_124 [FNSF]
480606
480522
-
Leu
TAG
[ENA]
¡û
>W1710537867
FNUB01000005
Bacteroidota
Tenacibaculum sp. MAR_2010_89 [FNUB]
108999
108915
-
Leu
TAG
[ENA]
¡û
>W1710570240
FOUZ01000018
Bacteroidota
Algoriella xinjiangensis [FOUZ]
38900
38984
+
Leu
TAG
[ENA]
¡û
>W1710590795
FRBH01000007
Bacteroidota
Chishuiella changwenlii [FRBH]
266931
267015
+
Leu
TAG
[ENA]
¡û
>W1710767393
LIQH01000020
Bacteroidota
Lacinutrix algicola [LIQH]
130256
130338
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK