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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118464 (119 seq.)
>W1710853366
LLWP01000002
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
19412
19496
+
Leu
TAG
[ENA]
¡û
>W1710870396
LMKM01000003
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
193983
194067
+
Leu
TAG
[ENA]
¡û
>W1710870397
LMKM01000003
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
194276
194360
+
Leu
TAG
[ENA]
¡û
>W1710871268
LMLE01000006
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
315260
315344
+
Leu
TAG
[ENA]
¡û
>W1710877060
LMPU01000008
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
319016
318932
-
Leu
TAG
[ENA]
¡û
>W1710888318
LMZQ01000009
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
91051
91135
+
Leu
TAG
[ENA]
¡û
>W1710888319
LMZQ01000009
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
91789
91873
+
Leu
TAG
[ENA]
¡û
>W1711179129
LWHJ01000022
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
800853
800935
+
Leu
TAG
[ENA]
¡û
>W1711629931
MPPL01000001
Bacteroidota
Mucilaginibacter polytrichastri [MPPL]
1794047
1794131
+
Leu
TAG
[ENA]
¡û
>W1712082068
NHOT01000012
Bacteroidota
Pedobacter sp. AJM [NHOT]
18322
18406
+
Leu
TAG
[ENA]
¡û
>C171057639
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
3863169
3863253
+
Leu
TAG
-
¡û
>C171057640
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
3863594
3863678
+
Leu
TAG
-
¡û
>C171117324
CP021237
Bacteroidota
Sphingobacteriaceae bacterium GW460-11-11-14-LB5 [CP021237]
1030691
1030775
+
Leu
TAG
-
¡û
>C171117325
CP021237
Bacteroidota
Sphingobacteriaceae bacterium GW460-11-11-14-LB5 [CP021237]
1031006
1031090
+
Leu
TAG
-
¡û
>W131145897
AQGK01000001
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
2311082
2311000
-
Leu
TAG
[ENA]
¡û
>W131234987
AULF01000003
Bacteroidota
Pedobacter glucosidilyticus DSM 23534 [AULF]
154138
154054
-
Leu
TAG
[ENA]
¡û
>w027775
ABCM01000001
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
66173
66087
-
Leu
TAG
[ENA]
¡û
>w027771
ABCM01000001
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
368569
368483
-
Leu
TAG
[ENA]
¡û
>W141027931
AKZJ01000008
Bacteroidota
Pedobacter arcticus A12 [AKZJ]
89246
89164
-
Leu
TAG
[ENA]
¡û
>W141142851
AWRU01000006
Bacteroidota
Pedobacter sp. V48 [AWRU]
378522
378604
+
Leu
TAG
[ENA]
¡û
>WENV181838687
OGVN01010472
[OGVN] freshwater metagenome; freshwater
876
958
+
Leu
TAG
[ENA]
¢þ
>W141187593
AYMG01000010
Bacteroidota
Pedobacter jeongneungensis H1ai [AYMG]
45132
45048
-
Leu
TAG
[ENA]
¡û
>W141187594
AYMG01000010
Bacteroidota
Pedobacter jeongneungensis H1ai [AYMG]
43847
43763
-
Leu
TAG
[ENA]
¡û
>W141292047
JAUG01000136
Bacteroidota
Pedobacter borealis DSM 19626 [JAUG]
7097
7013
-
Leu
TAG
[ENA]
¡û
>W141292048
JAUG01000136
Bacteroidota
Pedobacter borealis DSM 19626 [JAUG]
6541
6457
-
Leu
TAG
[ENA]
¡û
>W141350097
JCKI01000002
Bacteroidota
Pedobacter sp. R20-19 [JCKI]
777718
777802
+
Leu
TAG
[ENA]
¡û
>WENV183737679
PJUD01021432
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
102
184
+
Leu
TAG
[ENA]
¢þ
>WENV183740028
PJUF01000164
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
55183
55099
-
Leu
TAG
[ENA]
¢þ
>WENV183741719
PJUG01002341
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
151
233
+
Leu
TAG
[ENA]
¢þ
>WENV183742456
PJUI01000001
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
772632
772714
+
Leu
TAG
[ENA]
¢þ
>WENV183743562
PJUJ01006280
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
512
430
-
Leu
TAG
[ENA]
¢þ
>WENV183746497
POYD01041399
[POYD] biofilm metagenome; PVC pipe from biofilm reactor
3291
3209
-
Leu
TAG
[ENA]
¢þ
>WENV170003537
AGTN01369743
[AGTN] bioreactor metagenome; poplar biomass
111
195
+
Leu
TAG
[ENA]
¢þ
>WENV170004440
AGTN01678152
[AGTN] bioreactor metagenome; poplar biomass
220
138
-
Leu
TAG
[ENA]
¢þ
>WENV170012144
APMI01126200
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
621
705
+
Leu
TAG
[ENA]
¢þ
>WENV170991405
MWWA01187118
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
304
222
-
Leu
TAG
[ENA]
¢þ
>WENV170996194
MWWF01172627
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
59
141
+
Leu
TAG
[ENA]
¢þ
>WENV170997194
MWWG01045178
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
440
524
+
Leu
TAG
[ENA]
¢þ
>WENV171003254
NNBT01002926
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
19382
19298
-
Leu
TAG
[ENA]
¢þ
>WENV171003255
NNBT01002926
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
18338
18254
-
Leu
TAG
[ENA]
¢þ
>C181071990
CP022743
Bacteroidota
Mucilaginibacter xinganensis BJC16-A31 [CP022743]
2965012
2965094
+
Leu
TAG
-
¡û
>C181094379
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
2814976
2814894
-
Leu
TAG
-
¡û
>C191226434
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
2881330
2881412
+
Leu
TAG
-
¡û
>W09109612
ABUJ01000048
Bacteroidota
Pedobacter heparinus DSM 2366 [ABUJ]
3820
3902
+
Leu
TAG
[ENA]
¡û
>C09108563
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
3682530
3682448
-
Leu
TAG
[Ensembl]
¡û
>W1910664199
MBTA01000026
Bacteroidota
Pelobium manganitolerans YS-25 [MBTA]
116601
116683
+
Leu
TAG
[ENA]
¡û
>W1911496535
OCMT01000001
Bacteroidota
Pedobacter xixiisoli CGMCC 1.12803 [OCMT]
137766
137848
+
Leu
TAG
[ENA]
¡û
>W1911647379
QAJL01000001
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
1635078
1634996
-
Leu
TAG
[ENA]
¡û
>W1911647380
QAJL01000001
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
1634109
1634027
-
Leu
TAG
[ENA]
¡û
>W1911647645
QAJQ01000009
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
30453
30535
+
Leu
TAG
[ENA]
¡û
>W1911647646
QAJQ01000009
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
31097
31179
+
Leu
TAG
[ENA]
¡û
>W1810090305
PGFJ01000002
Bacteroidota
Mucilaginibacter auburnensis DSM 28175 [PGFJ]
400991
401073
+
Leu
TAG
[ENA]
¡û
>W1810405018
PYLS01000005
Bacteroidota
Pedobacter yulinensis YL28-9 [PYLS]
1351432
1351350
-
Leu
TAG
[ENA]
¡û
>W1810474628
QAIL01000077
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
11148
11066
-
Leu
TAG
[ENA]
¡û
>W1810474648
QAIL01000264
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
16838
16920
+
Leu
TAG
[ENA]
¡û
>W1810477200
QAOQ01000001
Bacteroidota
Mucilaginibacter yixingensis DSM 26809 [QAOQ]
1001473
1001555
+
Leu
TAG
[ENA]
¡û
>W1810503882
QBKL01000016
Bacteroidota
Pedobacter sp. OK291 [QBKL]
254317
254235
-
Leu
TAG
[ENA]
¡û
>W1810503883
QBKL01000016
Bacteroidota
Pedobacter sp. OK291 [QBKL]
253997
253915
-
Leu
TAG
[ENA]
¡û
>W1810503891
QBKM01000001
Bacteroidota
Pedobacter sp. YR016 [QBKM]
561472
561554
+
Leu
TAG
[ENA]
¡û
>W1810584230
QEYR01000019
Bacteroidota
Mucilaginibacter rubeus P1 [QEYR]
90004
89920
-
Leu
TAG
[ENA]
¡û
>W1810587237
QFKU01000008
Bacteroidota
Mucilaginibacter kameinonensis P4 [QFKU]
216599
216517
-
Leu
TAG
[ENA]
¡û
>W1810587314
QFKV01000040
Bacteroidota
Mucilaginibacter rubeus P3 [QFKV]
82756
82838
+
Leu
TAG
[ENA]
¡û
>W1810587352
QFKW01000039
Bacteroidota
Mucilaginibacter rubeus P2 [QFKW]
287041
286957
-
Leu
TAG
[ENA]
¡û
>W1810594607
QGDC01000002
Bacteroidota
Mucilaginibacter hurinus ZR32 [QGDC]
178925
179007
+
Leu
TAG
[ENA]
¡û
>W1810676133
QKLU01000001
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
995681
995763
+
Leu
TAG
[ENA]
¡û
>W1810676159
QKLU01000007
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
311731
311813
+
Leu
TAG
[ENA]
¡û
>W1810676185
QKLV01000003
Bacteroidota
Mucilaginibacter sp. OV119 [QKLV]
228363
228279
-
Leu
TAG
[ENA]
¡û
>W1810704225
QMHN01000002
Bacteroidota
Pedobacter chitinilyticus CM134L-2 [QMHN]
174049
173965
-
Leu
TAG
[ENA]
¡û
>W1810704274
QMHO01000006
Bacteroidota
Pedobacter nanyangensis Q-4 [QMHO]
70076
69992
-
Leu
TAG
[ENA]
¡û
>W1810704297
QMHP01000002
Bacteroidota
Nubsella zeaxanthinifaciens TDMA-5 [QMHP]
131007
131089
+
Leu
TAG
[ENA]
¡û
>W1810704358
QMHQ01000003
Bacteroidota
Pedobacter namyangjuensis 5G38 [QMHQ]
293209
293127
-
Leu
TAG
[ENA]
¡û
>W1810720094
QNQU01000027
Bacteroidota
Pedobacter miscanthi RS10 [QNQU]
202
284
+
Leu
TAG
[ENA]
¡û
>W1810720097
QNQU01000036
Bacteroidota
Pedobacter miscanthi RS10 [QNQU]
738
656
-
Leu
TAG
[ENA]
¡û
>W1810753596
QPCG01000002
Bacteroidota
Mucilaginibacter endophyticus RS1 [QPCG]
808375
808457
+
Leu
TAG
[ENA]
¡û
>W1810761049
QPKV01000002
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
874983
874901
-
Leu
TAG
[ENA]
¡û
>W1810789240
QRGB01000001
Bacteroidota
Pedobacter indicus SM1810 [QRGB]
3398491
3398409
-
Leu
TAG
[ENA]
¡û
>W1810885508
QUNJ01000004
Bacteroidota
Pedobacter sp. YR510 [QUNJ]
805608
805690
+
Leu
TAG
[ENA]
¡û
>W1511206106
JMTN01000006
Bacteroidota
Pedobacter glucosidilyticus DD6b [JMTN]
60722
60638
-
Leu
TAG
[ENA]
¡û
>W1511390964
JSYN01000015
Bacteroidota
Pedobacter kyungheensis KACC 16221 [JSYN]
246593
246677
+
Leu
TAG
[ENA]
¡û
>W1511390965
JSYN01000015
Bacteroidota
Pedobacter kyungheensis KACC 16221 [JSYN]
247104
247186
+
Leu
TAG
[ENA]
¡û
>W1511646572
LECU01000005
Bacteroidota
Pedobacter sp. BMA [LECU]
312509
312425
-
Leu
TAG
[ENA]
¡û
>W1511646588
LECU01000009
Bacteroidota
Pedobacter sp. BMA [LECU]
17692
17608
-
Leu
TAG
[ENA]
¡û
>C161049133
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
1379955
1380039
+
Leu
TAG
[Ensembl]
¡û
>C161049134
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
1380454
1380538
+
Leu
TAG
[Ensembl]
¡û
>W121063667
AJLG01000074
Bacteroidota
Pedobacter agri PB92 [AJLG]
9598
9682
+
Leu
TAG
[ENA]
¡û
>W1610612121
LGEL01000022
Bacteroidota
Pedobacter panaciterrae [LGEL]
19730
19648
-
Leu
TAG
[ENA]
¡û
>W1610716490
LLWP01000002
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
19412
19496
+
Leu
TAG
[ENA]
¡û
>W1610732742
LMKM01000003
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
193983
194067
+
Leu
TAG
[ENA]
¡û
>W1610732743
LMKM01000003
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
194276
194360
+
Leu
TAG
[ENA]
¡û
>W1610733614
LMLE01000006
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
315260
315344
+
Leu
TAG
[ENA]
¡û
>W1610739406
LMPU01000008
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
319016
318932
-
Leu
TAG
[ENA]
¡û
>W1610748696
LMZQ01000009
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
91051
91135
+
Leu
TAG
[ENA]
¡û
>W1610748697
LMZQ01000009
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
91789
91873
+
Leu
TAG
[ENA]
¡û
>W1610987081
LWHJ01000022
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
800853
800935
+
Leu
TAG
[ENA]
¡û
>W1710505638
FMTV01000002
Bacteroidota
Mucilaginibacter sp. NFR10 [FMTV]
647643
647727
+
Leu
TAG
[ENA]
¡û
>W1710512295
FMZH01000006
Bacteroidota
Pedobacter soli [FMZH]
184482
184398
-
Leu
TAG
[ENA]
¡û
>W1710512296
FMZH01000006
Bacteroidota
Pedobacter soli [FMZH]
184127
184045
-
Leu
TAG
[ENA]
¡û
>W1710513645
FNAI01000001
Bacteroidota
Mucilaginibacter pineti [FNAI]
683727
683809
+
Leu
TAG
[ENA]
¡û
>W1710515989
FNCG01000001
Bacteroidota
Mucilaginibacter gossypii [FNCG]
654765
654847
+
Leu
TAG
[ENA]
¡û
>W1710516052
FNCH01000007
Bacteroidota
Pedobacter terrae [FNCH]
210745
210829
+
Leu
TAG
[ENA]
¡û
>W1710516053
FNCH01000007
Bacteroidota
Pedobacter terrae [FNCH]
211327
211411
+
Leu
TAG
[ENA]
¡û
>W1710519660
FNEX01000004
Bacteroidota
Pedobacter sp. ok626 [FNEX]
71789
71873
+
Leu
TAG
[ENA]
¡û
>W1710522072
FNGY01000002
Bacteroidota
Pedobacter steynii [FNGY]
178
262
+
Leu
TAG
[ENA]
¡û
>W1710522119
FNGY01000020
Bacteroidota
Pedobacter steynii [FNGY]
285
201
-
Leu
TAG
[ENA]
¡û
>W1710525868
FNJV01000005
Bacteroidota
Mucilaginibacter sp. OK268 [FNJV]
194970
195054
+
Leu
TAG
[ENA]
¡û
>W1710546794
FOCL01000001
Bacteroidota
Mucilaginibacter gossypiicola [FOCL]
687671
687587
-
Leu
TAG
[ENA]
¡û
>W1710551685
FOGG01000019
Bacteroidota
Pedobacter rhizosphaerae [FOGG]
12328
12412
+
Leu
TAG
[ENA]
¡û
>W1710555447
FOJM01000005
Bacteroidota
Pedobacter suwonensis [FOJM]
197719
197803
+
Leu
TAG
[ENA]
¡û
>W1710555448
FOJM01000005
Bacteroidota
Pedobacter suwonensis [FOJM]
198252
198336
+
Leu
TAG
[ENA]
¡û
>W1710560875
FONS01000006
Bacteroidota
Pedobacter antarcticus [FONS]
157152
157070
-
Leu
TAG
[ENA]
¡û
>W1710563356
FOPP01000007
Bacteroidota
Pedobacter insulae [FOPP]
161260
161176
-
Leu
TAG
[ENA]
¡û
>W1710577044
FPAM01000013
Bacteroidota
Mucilaginibacter polytrichastri [FPAM]
16510
16594
+
Leu
TAG
[ENA]
¡û
>W1710583232
FQUQ01000002
Bacteroidota
Pedobacter caeni [FQUQ]
939362
939444
+
Leu
TAG
[ENA]
¡û
>W1710583233
FQUQ01000002
Bacteroidota
Pedobacter caeni [FQUQ]
940334
940418
+
Leu
TAG
[ENA]
¡û
>W1710592447
FRCM01000001
Bacteroidota
Mucilaginibacter sp. OK098 [FRCM]
737433
737349
-
Leu
TAG
[ENA]
¡û
>W1710595925
FTMG01000001
Bacteroidota
Mucilaginibacter lappiensis [FTMG]
46196
46112
-
Leu
TAG
[ENA]
¡û
>W1710606355
FWXT01000001
Bacteroidota
Pedobacter africanus [FWXT]
860519
860435
-
Leu
TAG
[ENA]
¡û
>W1710606791
FWYB01000007
Bacteroidota
Pedobacter nyackensis [FWYB]
215690
215608
-
Leu
TAG
[ENA]
¡û
>W1710733627
LGEL01000022
Bacteroidota
Pedobacter panaciterrae [LGEL]
19730
19648
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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