This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118516 (56 seq.)
>W1711092555
LTEE01000072
Actinomycetota
Corynebacterium sp. HMSC076C10 [LTEE]
7185
7267
+
Tyr
GTA
[ENA]
¡û
>W1711093861
LTFJ01000013
Actinomycetota
Corynebacterium sp. HMSC064E08 [LTFJ]
121737
121655
-
Tyr
GTA
[ENA]
¡û
>W1711095116
LTGN01000027
Actinomycetota
Corynebacterium sp. HMSC063F04 [LTGN]
116440
116522
+
Tyr
GTA
[ENA]
¡û
>W1711096284
LTHP01000134
Actinomycetota
Corynebacterium sp. HMSC077C02 [LTHP]
122
40
-
Tyr
GTA
[ENA]
¡û
>W1711096298
LTHQ01000016
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
7143
7225
+
Tyr
GTA
[ENA]
¡û
>W1711096989
LTIG01000038
Actinomycetota
Corynebacterium sp. HMSC077G01 [LTIG]
15996
15914
-
Tyr
GTA
[ENA]
¡û
>W1711097541
LTIU01000015
Actinomycetota
Corynebacterium sp. HMSC064H12 [LTIU]
7138
7220
+
Tyr
GTA
[ENA]
¡û
>W1711098023
LTJF01000012
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
259900
259818
-
Tyr
GTA
[ENA]
¡û
>W1711098576
LTJR01000030
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
121069
121151
+
Tyr
GTA
[ENA]
¡û
>W1711099064
LTKD01000033
Actinomycetota
Corynebacterium sp. HMSC077G07 [LTKD]
7135
7217
+
Tyr
GTA
[ENA]
¡û
>W1711099374
LTKK01000054
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
57019
57101
+
Tyr
GTA
[ENA]
¡û
>W1711102263
LTNP01000011
Actinomycetota
Corynebacterium sp. HMSC075F02 [LTNP]
180
98
-
Tyr
GTA
[ENA]
¡û
>W1711102314
LTNQ01000015
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
7277
7359
+
Tyr
GTA
[ENA]
¡û
>W1711102387
LTNR01000066
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
52810
52728
-
Tyr
GTA
[ENA]
¡û
>W1711102403
LTNS01000004
Actinomycetota
Corynebacterium sp. HMSC073B01 [LTNS]
180
98
-
Tyr
GTA
[ENA]
¡û
>W1711102463
LTNT01000005
Actinomycetota
Corynebacterium sp. HMSC072D01 [LTNT]
110628
110710
+
Tyr
GTA
[ENA]
¡û
>W1711102552
LTNU01000070
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
54196
54278
+
Tyr
GTA
[ENA]
¡û
>W1711102584
LTNV01000046
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
62183
62101
-
Tyr
GTA
[ENA]
¡û
>W1711103258
LTOO01000005
Actinomycetota
Corynebacterium sp. HMSC073H12 [LTOO]
250776
250694
-
Tyr
GTA
[ENA]
¡û
>W1711103458
LTOS01000040
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
56975
57057
+
Tyr
GTA
[ENA]
¡û
>W1711107018
LTSJ01000034
Actinomycetota
Corynebacterium sp. HMSC064E07 [LTSJ]
181
99
-
Tyr
GTA
[ENA]
¡û
>W1711110043
LTVE01000010
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
7138
7220
+
Tyr
GTA
[ENA]
¡û
>W1711112761
LTXS01000004
Actinomycetota
Corynebacterium sp. HMSC065H09 [LTXS]
109013
109095
+
Tyr
GTA
[ENA]
¡û
>W1711113445
LTYH01000021
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
257859
257777
-
Tyr
GTA
[ENA]
¡û
>W1711114794
LTZP01000061
Actinomycetota
Corynebacterium sp. HMSC11E11 [LTZP]
2241
2157
-
Tyr
GTA
[ENA]
¡û
>W1711114845
LTZQ01000018
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
76759
76677
-
Tyr
GTA
[ENA]
¡û
>W1711114924
LTZS01000011
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
54176
54258
+
Tyr
GTA
[ENA]
¡û
>W1711186813
LWON01000011
Actinomycetota
Corynebacterium sp. HMSC14B06 [LWON]
144353
144435
+
Tyr
GTA
[ENA]
¡û
>W1711187906
LWPW01000089
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
34774
34692
-
Tyr
GTA
[ENA]
¡û
>W1711427599
MIFV01000010
Actinomycetota
Corynebacterium amycolatum [MIFV]
149
67
-
Tyr
GTA
[ENA]
¡û
>W1711507484
MKXS01000007
Actinomycetota
Corynebacterium sp. S1S1 [MKXS]
7232
7314
+
Tyr
GTA
[ENA]
¡û
>W1711724014
MTPT01000018
Actinomycetota
Corynebacterium amycolatum [MTPT]
948
866
-
Tyr
GTA
[ENA]
¡û
>C171002021
CP009248
Actinomycetota
Corynebacterium sphenisci DSM 44792 [CP009248]
286146
286230
+
Tyr
GTA
-
¡û
>W131000447
AGEM01000008
Actinomycetota
Corynebacterium sp. HFH0082 [AGEM]
8451
8533
+
Tyr
GTA
[ENA]
¡û
>WENV180554393
OCJN01000335
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
7242
7324
+
Tyr
GTA
[ENA]
¢þ
>WENV181326371
OFLL01000177
[OFLL] metagenome; faeces
198
280
+
Tyr
GTA
[ENA]
¢þ
>WENV182629050
OJKR01002193
[OJKR] metagenome; surface
92
10
-
Tyr
GTA
[ENA]
¢þ
>WENV182640484
OJLB01016831
[OJLB] metagenome; surface
546
628
+
Tyr
GTA
[ENA]
¢þ
>WENV182641541
OJLI01000405
[OJLI] metagenome; surface
655
572
-
Tyr
GTA
[ENA]
¢þ
>WENV182643148
OJLS01001964
[OJLS] metagenome; surface
1835
1920
+
Tyr
GTA
[ENA]
¢þ
>WENV182645655
OJLZ01000339
[OJLZ] metagenome; surface
6541
6624
+
Tyr
GTA
[ENA]
¢þ
>W09114628
ABZU01000002
Actinomycetota
Corynebacterium amycolatum SK46 [ABZU]
249986
249904
-
Tyr
GTA
[ENA]
¡û
>C181056551
CP022054
Actinomycetota
Corynebacterium jeikeium FDAARGOS_328 [CP022054]
2339647
2339729
+
Tyr
GTA
-
¡û
>C191111886
CP033784
Actinomycetota
Corynebacterium jeikeium FDAARGOS_574 [CP033784]
444591
444673
+
Tyr
GTA
-
¡û
>W1911596604
PNHH01000007
Actinomycetota
Corynebacterium kroppenstedtii UMB0869 [PNHH]
85432
85349
-
Tyr
GTA
[ENA]
¡û
>W1810187600
PKHS01000003
Actinomycetota
Corynebacterium amycolatum UMB0042 [PKHS]
43277
43359
+
Tyr
GTA
[ENA]
¡û
>W1810187666
PKHT01000008
Actinomycetota
Corynebacterium amycolatum UMB0338 [PKHT]
307
225
-
Tyr
GTA
[ENA]
¡û
>C151039860
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
1590113
1590195
+
Tyr
GTA
[Ensembl]
¡û
>C11106276
CP002857
Actinomycetota
Corynebacterium resistens DSM 45100 [CP002857]
2275952
2275868
-
Tyr
GTA
[Ensembl]
¡û
>W1511351351
JRNE01000040
Actinomycetota
Corynebacterium freneyi DNF00450 [JRNE]
166226
166142
-
Tyr
GTA
[ENA]
¡û
>W1511442748
JUSD01000001
Actinomycetota
Corynebacterium sp. 805_CJEI 805_CJEI [JUSD]
131746
131828
+
Tyr
GTA
[ENA]
¡û
>W1511457786
JVIP01000007
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
117064
117146
+
Tyr
GTA
[ENA]
¡û
>W1511463610
JVOW01000030
Actinomycetota
Corynebacterium sp. 239_CJEI 239_CJEI [JVOW]
1524
1442
-
Tyr
GTA
[ENA]
¡û
>W1511464322
JVPT01000064
Actinomycetota
Corynebacterium sp. 212_CJEI 212_CJEI [JVPT]
54075
54157
+
Tyr
GTA
[ENA]
¡û
>W1511469456
JVVM01000016
Actinomycetota
Corynebacterium vitaeruminis 1285_CVIT [JVVM]
516
434
-
Tyr
GTA
[ENA]
¡û
>W1511476419
JWEP01000030
Actinomycetota
Corynebacterium urealyticum 1055_CURE [JWEP]
116022
116104
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK