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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118524 (78 seq.)
>W1710871819
LMLM01000031
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
89512
89596
+
Tyr
GTA
[ENA]
¡û
>W1710874781
LMNW01000033
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
711
627
-
Tyr
GTA
[ENA]
¡û
>W1710890937
LNCE01000132
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
1107
1191
+
Tyr
GTA
[ENA]
¡û
>W1711033419
LRHW01000079
Betaproteobacteria
Janthinobacterium lividum [LRHW]
267288
267372
+
Tyr
GTA
[ENA]
¡û
>W1711033454
LRHX01000007
Betaproteobacteria
Janthinobacterium sp. MP5059B [LRHX]
313142
313226
+
Tyr
GTA
[ENA]
¡û
>W1711033532
LRHY01000107
Betaproteobacteria
Janthinobacterium sp. HH100 [LRHY]
480
396
-
Tyr
GTA
[ENA]
¡û
>W1711033604
LRHZ01000025
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
69563
69647
+
Tyr
GTA
[ENA]
¡û
>W1711033647
LRIA01000063
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
480
396
-
Tyr
GTA
[ENA]
¡û
>W1711033727
LRIB01000047
Betaproteobacteria
Janthinobacterium sp. HH104 [LRIB]
240953
241037
+
Tyr
GTA
[ENA]
¡û
>W1711033761
LRIC01000019
Betaproteobacteria
Janthinobacterium sp. HH106 [LRIC]
236854
236938
+
Tyr
GTA
[ENA]
¡û
>W1711033802
LRID01000038
Betaproteobacteria
Janthinobacterium sp. HH107 [LRID]
18478
18562
+
Tyr
GTA
[ENA]
¡û
>W1711046604
LROM01000050
Betaproteobacteria
Duganella phyllosphaerae [LROM]
705
621
-
Tyr
GTA
[ENA]
¡û
>W1711308596
MAQB02000001
Betaproteobacteria
Janthinobacterium lividum [MAQB]
1541689
1541605
-
Tyr
GTA
[ENA]
¡û
>W1712004476
NEGX01000041
Betaproteobacteria
Janthinobacterium sp. GW460W [NEGX]
52017
52101
+
Tyr
GTA
[ENA]
¡û
>W1712004529
NEGY01000012
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
65851
65767
-
Tyr
GTA
[ENA]
¡û
>W1712004630
NEGZ01000039
Betaproteobacteria
Janthinobacterium sp. GW458P [NEGZ]
52934
53018
+
Tyr
GTA
[ENA]
¡û
>W1712004704
NEHA01000045
Betaproteobacteria
Janthinobacterium sp. GW456W [NEHA]
52028
52112
+
Tyr
GTA
[ENA]
¡û
>W1712004766
NEHB01000010
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
221898
221814
-
Tyr
GTA
[ENA]
¡û
>C171010507
CP011319
Betaproteobacteria
Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319]
5818510
5818426
-
Tyr
GTA
-
¡û
>C171094958
CP019510
Betaproteobacteria
Janthinobacterium sp. LM6 [CP019510]
663489
663573
+
Tyr
GTA
-
¡û
>W131176153
ARJV01000010
Betaproteobacteria
Duganella zoogloeoides ATCC 25935 [ARJV]
106871
106955
+
Tyr
GTA
[ENA]
¡û
>WENV180018489
FSZM01000069
[FSZM] metagenome; soil
15976
16060
+
Tyr
GTA
[ENA]
¢þ
>WENV180020977
FTDH01000021
[FTDH] metagenome; soil
1123
1039
-
Tyr
GTA
[ENA]
¢þ
>WENV180025480
FTIP01013410
[FTIP] metagenome; soil
492
576
+
Tyr
GTA
[ENA]
¢þ
>WENV180308693
OBJR01124373
[OBJR] soil metagenome; soil
209
293
+
Tyr
GTA
[ENA]
¢þ
>WENV170558045
CXWL01047338
[CXWL] groundwater metagenome; biofilm material
462
378
-
Tyr
GTA
[ENA]
¢þ
>WENV170559192
CXWL01113704
[CXWL] groundwater metagenome; biofilm material
581
497
-
Tyr
GTA
[ENA]
¢þ
>WENV170559213
CXWL01114617
[CXWL] groundwater metagenome; biofilm material
459
375
-
Tyr
GTA
[ENA]
¢þ
>WENV170559654
CXWL01135144
[CXWL] groundwater metagenome; biofilm material
798
714
-
Tyr
GTA
[ENA]
¢þ
>WENV170573438
FLYK01026399
[FLYK] hot springs metagenome; Sediment
105
189
+
Tyr
GTA
[ENA]
¢þ
>WENV170575382
FLYN01070300
[FLYN] hot springs metagenome; Sediment
491
407
-
Tyr
GTA
[ENA]
¢þ
>W141484451
JFYR01000012
Betaproteobacteria
Janthinobacterium lividum [JFYR]
446840
446924
+
Tyr
GTA
[ENA]
¡û
>C181081095
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
688268
688352
+
Tyr
GTA
-
¡û
>C181102655
CP024608
Betaproteobacteria
Massilia violaceinigra B2 [CP024608]
794055
794139
+
Tyr
GTA
-
¡û
>C191098133
CP033019
Betaproteobacteria
Janthinobacterium agaricidamnosum BHSEK [CP033019]
6277804
6277888
+
Tyr
GTA
-
¡û
>C191188138
CP041185
Betaproteobacteria
Janthinobacterium tructae SNU WT3 [CP041185]
4547197
4547281
+
Tyr
GTA
-
¡û
>W141821510
JQNP01000001
Betaproteobacteria
Janthinobacterium sp. RA13 [JQNP]
4690950
4691034
+
Tyr
GTA
[ENA]
¡û
>W1911199896
NRDQ01000133
Betaproteobacteria
Janthinobacterium sp. AD80 [NRDQ]
40316
40400
+
Tyr
GTA
[ENA]
¡û
>W1911802839
QYUP01000058
Betaproteobacteria
Massilia cavernae K1S02-61 [QYUP]
2686
2770
+
Tyr
GTA
[ENA]
¡û
>W1810062451
PDOC01000029
Betaproteobacteria
Massilia eurypsychrophila JCM 30074 [PDOC]
54115
54199
+
Tyr
GTA
[ENA]
¡û
>W1810068157
PDZI01000004
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
431947
432031
+
Tyr
GTA
[ENA]
¡û
>W1810068277
PDZJ01000004
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
446228
446312
+
Tyr
GTA
[ENA]
¡û
>W1810068361
PDZK01000004
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
552
468
-
Tyr
GTA
[ENA]
¡û
>W1810068389
PDZL01000004
Betaproteobacteria
Janthinobacterium sp. BJB426 [PDZL]
457459
457543
+
Tyr
GTA
[ENA]
¡û
>W1810068478
PDZM01000003
Betaproteobacteria
Janthinobacterium sp. BJB312 [PDZM]
271608
271692
+
Tyr
GTA
[ENA]
¡û
>W1810068541
PDZN01000001
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
14533
14449
-
Tyr
GTA
[ENA]
¡û
>W1810068670
PDZO02000019
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
112364
112448
+
Tyr
GTA
[ENA]
¡û
>W1810069788
PEBS01000086
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
21646
21730
+
Tyr
GTA
[ENA]
¡û
>W1810071314
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
2717012
2716928
-
Tyr
GTA
[ENA]
¡û
>W1810072811
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
2261748
2261664
-
Tyr
GTA
[ENA]
¡û
>W1810089385
PGES01000001
Betaproteobacteria
Janthinobacterium sp. 67 [PGES]
4510598
4510682
+
Tyr
GTA
[ENA]
¡û
>W1810121262
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
4117729
4117813
+
Tyr
GTA
[ENA]
¡û
>W1810172806
PJMQ01000001
Betaproteobacteria
Janthinobacterium sp. 61 [PJMQ]
4753308
4753392
+
Tyr
GTA
[ENA]
¡û
>W1810576756
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
703955
704039
+
Tyr
GTA
[ENA]
¡û
>C151100174
HG322949
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [HG322949]
5381956
5381872
-
Tyr
GTA
[Ensembl]
¡û
>W1511355698
JRRH01000025
Betaproteobacteria
Janthinobacterium lividum MTR [JRRH]
507
423
-
Tyr
GTA
[ENA]
¡û
>W1511588735
LBCO01000004
Betaproteobacteria
Janthinobacterium sp. KBS0711 [LBCO]
479210
479294
+
Tyr
GTA
[ENA]
¡û
>W121031792
AHHB01000014
Betaproteobacteria
Janthinobacterium lividum PAMC 25724 [AHHB]
128301
128385
+
Tyr
GTA
[ENA]
¡û
>W1610070479
BCTH01000046
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
4853
4937
+
Tyr
GTA
[ENA]
¡û
>W1610093112
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
1182866
1182950
+
Tyr
GTA
[ENA]
¡û
>W1610163406
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
1182866
1182950
+
Tyr
GTA
[ENA]
¡û
>W1610734165
LMLM01000031
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
89512
89596
+
Tyr
GTA
[ENA]
¡û
>W1610737127
LMNW01000033
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
711
627
-
Tyr
GTA
[ENA]
¡û
>W1610751333
LNCE01000132
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
1107
1191
+
Tyr
GTA
[ENA]
¡û
>W1611056263
MAQB01000056
Betaproteobacteria
Janthinobacterium lividum [MAQB]
238126
238042
-
Tyr
GTA
[ENA]
¡û
>W1710067852
BCTH01000046
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
4853
4937
+
Tyr
GTA
[ENA]
¡û
>W1710096320
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
1182866
1182950
+
Tyr
GTA
[ENA]
¡û
>W1710165073
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
1182866
1182950
+
Tyr
GTA
[ENA]
¡û
>W1710509352
FMXD01000004
Betaproteobacteria
Janthinobacterium sp. 551a [FMXD]
785
701
-
Tyr
GTA
[ENA]
¡û
>W1710517044
FNDA01000003
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
364253
364169
-
Tyr
GTA
[ENA]
¡û
>W1710522202
FNHA01000005
Betaproteobacteria
Janthinobacterium sp. OK676 [FNHA]
393179
393263
+
Tyr
GTA
[ENA]
¡û
>W1710547609
FODC01000008
Betaproteobacteria
Duganella sp. CF517 [FODC]
118204
118288
+
Tyr
GTA
[ENA]
¡û
>W1710556752
FOKL01000006
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
809
725
-
Tyr
GTA
[ENA]
¡û
>W1710578428
FPBO01000031
Betaproteobacteria
Pseudoduganella namucuonensis [FPBO]
1345
1261
-
Tyr
GTA
[ENA]
¡û
>W1710581728
FPKH01000006
Betaproteobacteria
Janthinobacterium lividum [FPKH]
736
652
-
Tyr
GTA
[ENA]
¡û
>W1710586015
FQWU01000003
Betaproteobacteria
Massilia sp. CF038 [FQWU]
611
527
-
Tyr
GTA
[ENA]
¡û
>W1710596832
FTMV01000001
Betaproteobacteria
Janthinobacterium sp. TND4EL3 [FTMV]
433118
433202
+
Tyr
GTA
[ENA]
¡û
>W1710720672
LFKP01000014
Betaproteobacteria
Janthinobacterium lividum [LFKP]
335547
335463
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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