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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118528 (41 seq.)
>W1710934450
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
328439
328523
+
Tyr
GTA
[ENA]
¡û
>W1710934487
LOJJ01000001
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
240187
240271
+
Tyr
GTA
[ENA]
¡û
>W1711147335
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
42067
42151
+
Tyr
GTA
[ENA]
¡û
>W1711149043
LVLD01000001
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
42067
42151
+
Tyr
GTA
[ENA]
¡û
>W1711149080
LVLE01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
42067
42151
+
Tyr
GTA
[ENA]
¡û
>W1711149116
LVLF01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
72055
72139
+
Tyr
GTA
[ENA]
¡û
>W1711149154
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
42067
42151
+
Tyr
GTA
[ENA]
¡û
>W1711272412
LZFI01000001
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
80648
80732
+
Tyr
GTA
[ENA]
¡û
>W1711282005
LZMQ01000004
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
21016
20932
-
Tyr
GTA
[ENA]
¡û
>W1711282015
LZMR01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
25292
25376
+
Tyr
GTA
[ENA]
¡û
>W1711625792
MPIY01000017
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
204063
204147
+
Tyr
GTA
[ENA]
¡û
>W1711932789
NAIA01000001
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
403486
403570
+
Tyr
GTA
[ENA]
¡û
>W1712077010
NGUO01000002
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
277035
277119
+
Tyr
GTA
[ENA]
¡û
>W1712077057
NGUP01000003
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
629411
629495
+
Tyr
GTA
[ENA]
¡û
>C171035099
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
81534
81618
+
Tyr
GTA
-
¡û
>C171035138
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
81534
81618
+
Tyr
GTA
-
¡û
>C171035176
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
42067
42151
+
Tyr
GTA
-
¡û
>W131220800
ATZV01000036
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
773
857
+
Tyr
GTA
[ENA]
¡û
>C017368
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
42067
42151
+
Tyr
GTA
[Ensembl]
¡û
>WENV016919
AACY020472296
Marine microbial communities from Global Ocean Sampling (GOS)
3170
3254
+
Tyr
GTA
[ENA]
>WENV181843119
OGVU01000944
[OGVU] freshwater metagenome; freshwater
1896
1812
-
Tyr
GTA
[ENA]
¢þ
>C08007606
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
39190
39274
+
Tyr
GTA
[Ensembl]
¡û
>WENV170617378
FUWD012923934
[FUWD] metagenome; unknown
722
806
+
Tyr
GTA
[ENA]
¢þ
>W09106297
AAUC01000015
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
918
834
-
Tyr
GTA
[ENA]
¡û
>C181187670
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
38028
38112
+
Tyr
GTA
-
¡û
>C181218884
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
1837069
1837153
+
Tyr
GTA
-
¡û
>C181218917
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
1590862
1590946
+
Tyr
GTA
-
¡û
>C181218949
LT606949
Betaproteobacteria
Polynucleobacter necessarius [LT606949]
1685299
1685383
+
Tyr
GTA
-
¡û
>C181218988
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
1532368
1532452
+
Tyr
GTA
-
¡û
>C181219040
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
282
198
-
Tyr
GTA
-
¡û
>C181219047
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
683959
684043
+
Tyr
GTA
-
¡û
>C181219093
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
1556396
1556480
+
Tyr
GTA
-
¡û
>C141003780
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
38179
38263
+
Tyr
GTA
[Ensembl]
¡û
>W1911490746
OANS01000003
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
92753
92837
+
Tyr
GTA
[ENA]
¡û
>W1810102002
PGTX01000002
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
336198
336114
-
Tyr
GTA
[ENA]
¡û
>W1810699136
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
412654
412738
+
Tyr
GTA
[ENA]
¡û
>W1810699174
QMCH01000001
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
274690
274774
+
Tyr
GTA
[ENA]
¡û
>C151025634
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
37476
37560
+
Tyr
GTA
[Ensembl]
¡û
>C161092366
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
39068
39152
+
Tyr
GTA
[Ensembl]
¡û
>W1610791981
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
328439
328523
+
Tyr
GTA
[ENA]
¡û
>W1610792018
LOJJ01000001
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
240187
240271
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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