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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118549 (35 seq.)
>W1711385909
MEEU01000003
Alphaproteobacteria
Pelagibacterium sp. SCN 63-23 [MEEU]
156554
156638
+
Leu
CAG
[ENA]
¡û
>W1711385992
MEEV01000012
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
162141
162225
+
Leu
CAG
[ENA]
¡û
>W1711585675
MNZZ01000689
Alphaproteobacteria
Rhodobacteraceae bacterium CG2_30_10_405 [MNZZ]
2529
2445
-
Leu
CAG
[ENA]
¡û
>C171110780
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
1615715
1615631
-
Leu
CAG
-
¡û
>WENV181167996
OEIU01124702
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
470
554
+
Leu
CAG
[ENA]
¢þ
>W141242832
CAIU01000017
Alphaproteobacteria
Pseudaminobacter salicylatoxidans KCT001 [CAIU]
129778
129862
+
Leu
CAG
[ENA]
¡û
>W141260973
CCAO010000078
Alphaproteobacteria
Devosia sp. DBB001 DDB001 [CCAO]
44956
44872
-
Leu
CAG
[ENA]
¡û
>WENV170004351
AGTN01650328
[AGTN] bioreactor metagenome; poplar biomass
444
360
-
Leu
CAG
[ENA]
¢þ
>WENV170710498
LNFM01001901
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
44554
44638
+
Leu
CAG
[ENA]
¢þ
>W141461711
JFGS01000003
Alphaproteobacteria
Haematobacter missouriensis [JFGS]
247447
247363
-
Leu
CAG
[ENA]
¡û
>C181084416
CP023548
Alphaproteobacteria
Rhodobacter sp. CZR27 [CP023548]
3141059
3141143
+
Leu
CAG
-
¡û
>C181119674
CP025583
Alphaproteobacteria
Paracoccus jeotgali CBA4604 [CP025583]
2349638
2349722
+
Leu
CAG
-
¡û
>W141814313
JQGB01000023
Alphaproteobacteria
Devosia sp. 17-2-E-8 [JQGB]
38375
38291
-
Leu
CAG
[ENA]
¡û
>W1910548861
FZOV01000002
Alphaproteobacteria
Cereibacter sphaeroides DSM 18937 [FZOV]
589332
589416
+
Leu
CAG
[ENA]
¡û
>W1911245327
NSJZ01000004
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
19668
19752
+
Leu
CAG
[ENA]
¡û
>W1911813258
QZEW01000098
Alphaproteobacteria
Paracoccus siganidrum DSM 26381 [QZEW]
10043
10127
+
Leu
CAG
[ENA]
¡û
>W1810116268
PHOB01000036
Alphaproteobacteria
Cereibacter sphaeroides YL101 [PHOB]
19721
19637
-
Leu
CAG
[ENA]
¡û
>W1810584531
QFBB01000004
Alphaproteobacteria
Thioclava sp. NG1 [QFBB]
286909
286825
-
Leu
CAG
[ENA]
¡û
>W1810862275
QTUJ01000004
Alphaproteobacteria
Paracoccus versutus DSM 17099 [QTUJ]
398390
398306
-
Leu
CAG
[ENA]
¡û
>C151079173
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
4022129
4022213
+
Leu
CAG
[Ensembl]
¡û
>C11117047
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
2906555
2906639
+
Leu
CAG
[Ensembl]
¡û
>W1511348651
JRKP01000039
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
3211
3127
-
Leu
CAG
[ENA]
¡û
>W1511348697
JRKQ01000046
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
21147
21231
+
Leu
CAG
[ENA]
¡û
>W1511348753
JRKR01000109
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
1050
966
-
Leu
CAG
[ENA]
¡û
>W1511348772
JRKS01000004
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
28624
28540
-
Leu
CAG
[ENA]
¡û
>W1511348837
JRKT01000048
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
22104
22188
+
Leu
CAG
[ENA]
¡û
>W1511541941
JZEX01000115
Alphaproteobacteria
Devosia geojensis BD-c194 [JZEX]
33720
33636
-
Leu
CAG
[ENA]
¡û
>W1610049855
BBFH01001287
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
402
318
-
Leu
CAG
[ENA]
¡û
>W1710046254
BBFH01001287
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
402
318
-
Leu
CAG
[ENA]
¡û
>W1710513604
FNAH01000001
Alphaproteobacteria
Paracoccus isoporae [FNAH]
503464
503548
+
Leu
CAG
[ENA]
¡û
>W1710528199
FNNA01000001
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
1110790
1110874
+
Leu
CAG
[ENA]
¡û
>W1710540958
FNXG01000004
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
172948
173032
+
Leu
CAG
[ENA]
¡û
>W1710582188
FPKU01000003
Alphaproteobacteria
Devosia enhydra [FPKU]
755688
755604
-
Leu
CAG
[ENA]
¡û
>W1710592389
FRCK01000010
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
58379
58463
+
Leu
CAG
[ENA]
¡û
>W1710626826
JPKW01000004
Alphaproteobacteria
Paracoccus sp. SM22M-07 [JPKW]
235861
235777
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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