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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118550 (71 seq.)
>W1710860195
LMCR01000016
Alphaproteobacteria
Devosia sp. Root105 [LMCR]
35509
35425
-
Leu
GAG
[ENA]
¡û
>W1710861945
LMEA01000007
Alphaproteobacteria
Devosia sp. Root413D1 [LMEA]
609651
609567
-
Leu
GAG
[ENA]
¡û
>W1710866373
LMHK01000001
Alphaproteobacteria
Devosia sp. Root685 [LMHK]
844748
844664
-
Leu
GAG
[ENA]
¡û
>W1710871899
LMLO01000021
Alphaproteobacteria
Devosia sp. Leaf64 [LMLO]
727352
727436
+
Leu
GAG
[ENA]
¡û
>W1710878239
LMQU01000001
Alphaproteobacteria
Devosia sp. Leaf420 [LMQU]
103678
103594
-
Leu
GAG
[ENA]
¡û
>W1711166999
LVVY01000137
Alphaproteobacteria
Devosia elaeis S37 [LVVY]
4914
4830
-
Leu
GAG
[ENA]
¡û
>W1711384726
MEDI01000501
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
8519
8435
-
Leu
GAG
[ENA]
¡û
>W1711385160
MEDU01000046
Alphaproteobacteria
Devosia sp. SCN 66-27 [MEDU]
8
92
+
Leu
GAG
[ENA]
¡û
>W1711385861
MEET01000004
Alphaproteobacteria
Pelagibacterium sp. SCN 63-126 [MEET]
50456
50372
-
Leu
GAG
[ENA]
¡û
>W1711385934
MEEU01000021
Alphaproteobacteria
Pelagibacterium sp. SCN 63-23 [MEEU]
55356
55272
-
Leu
GAG
[ENA]
¡û
>W1711386005
MEEV01000017
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
93307
93223
-
Leu
GAG
[ENA]
¡û
>W1711386058
MEEV01000071
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
29139
29222
+
Leu
GAG
[ENA]
¡û
>W1711387064
MEGF01000016
Alphaproteobacteria
Pelagibacterium sp. SCN 68-10 [MEGF]
3993
4077
+
Leu
GAG
[ENA]
¡û
>W1711387070
MEGG01000007
Alphaproteobacteria
Pelagibacterium sp. SCN 63-17 [MEGG]
51323
51407
+
Leu
GAG
[ENA]
¡û
>W1711504834
MKUY01000003
Alphaproteobacteria
Devosia sp. 63-57 [MKUY]
50427
50343
-
Leu
GAG
[ENA]
¡û
>W1711504866
MKUZ01000002
Alphaproteobacteria
Devosia sp. 66-22 [MKUZ]
3996
3912
-
Leu
GAG
[ENA]
¡û
>W1711504925
MKVA01000005
Alphaproteobacteria
Devosia sp. 67-54 [MKVA]
673956
673872
-
Leu
GAG
[ENA]
¡û
>W1711504958
MKVB01000001
Alphaproteobacteria
Devosia sp. 66-14 [MKVB]
347065
346981
-
Leu
GAG
[ENA]
¡û
>W131162110
AQYH01000018
Alphaproteobacteria
Kaistia granuli DSM 23481 [AQYH]
37512
37596
+
Leu
GAG
[ENA]
¡û
>W131230417
AUHO01000011
Alphaproteobacteria
Kaistia adipata DSM 17808 [AUHO]
97414
97330
-
Leu
GAG
[ENA]
¡û
>WENV180020330
FTCZ01001615
[FTCZ] metagenome; soil
16489
16573
+
Leu
GAG
[ENA]
¢þ
>WENV180020465
FTCZ01004321
[FTCZ] metagenome; soil
752
668
-
Leu
GAG
[ENA]
¢þ
>WENV180020807
FTDB01002183
[FTDB] metagenome; soil
16038
15954
-
Leu
GAG
[ENA]
¢þ
>WENV180020991
FTDJ01000402
[FTDJ] metagenome; soil
98
14
-
Leu
GAG
[ENA]
¢þ
>WENV180028103
FTIZ01751685
[FTIZ] metagenome; soil
5920
6004
+
Leu
GAG
[ENA]
¢þ
>WENV180033560
FTKK01542383
[FTKK] metagenome; soil
537
621
+
Leu
GAG
[ENA]
¢þ
>WENV180033891
FTKM01000007
[FTKM] metagenome; soil
377046
377130
+
Leu
GAG
[ENA]
¢þ
>WENV180035049
FTKT01000469
[FTKT] metagenome; soil
31458
31542
+
Leu
GAG
[ENA]
¢þ
>WENV180285968
OBID01866258
[OBID] metagenome; sludge
168
84
-
Leu
GAG
[ENA]
¢þ
>WENV181228035
OFDN01119421
[OFDN] hot springs metagenome; Water
559
475
-
Leu
GAG
[ENA]
¢þ
>W141260987
CCAO010000090
Alphaproteobacteria
Devosia sp. DBB001 DDB001 [CCAO]
87818
87902
+
Leu
GAG
[ENA]
¡û
>WENV183697044
OUNJ010001279
[OUNJ] metagenome; soil
4777
4693
-
Leu
GAG
[ENA]
¢þ
>WENV183697054
OUNJ010001540
[OUNJ] metagenome; soil
3236
3320
+
Leu
GAG
[ENA]
¢þ
>WENV183697062
OUNJ010001657
[OUNJ] metagenome; soil
285
369
+
Leu
GAG
[ENA]
¢þ
>WENV183697457
OUNJ010979481
[OUNJ] metagenome; soil
1135
1051
-
Leu
GAG
[ENA]
¢þ
>WENV183728973
PJTQ01001651
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
5823
5739
-
Leu
GAG
[ENA]
¢þ
>WENV183729947
PJTR01000231
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
8512
8596
+
Leu
GAG
[ENA]
¢þ
>WENV183731725
PJTT01000124
[PJTT] soil metagenome; Soil (2) enriched on wood chips
32942
33026
+
Leu
GAG
[ENA]
¢þ
>WENV183740455
PJUF01002332
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
5824
5740
-
Leu
GAG
[ENA]
¢þ
>WENV183741771
PJUG01008602
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
491
575
+
Leu
GAG
[ENA]
¢þ
>WENV183743493
PJUJ01002283
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
2974
3058
+
Leu
GAG
[ENA]
¢þ
>WENV183743664
PJUJ01017091
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
574
658
+
Leu
GAG
[ENA]
¢þ
>WENV183743669
PJUJ01017540
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
5
89
+
Leu
GAG
[ENA]
¢þ
>WENV183743730
PJUJ01032885
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
315
231
-
Leu
GAG
[ENA]
¢þ
>WENV183745112
PJUL01002489
[PJUL] feces metagenome; Chicken feces enriched on filter paper
3629
3545
-
Leu
GAG
[ENA]
¢þ
>WENV170003076
AGTN01221822
[AGTN] bioreactor metagenome; poplar biomass
378
294
-
Leu
GAG
[ENA]
¢þ
>C181139132
CP026747
Alphaproteobacteria
Devosia sp. I507 [CP026747]
3455805
3455889
+
Leu
GAG
-
¡û
>C191005616
AP018827
Alphaproteobacteria
Asticcacaulis excentricus M6 [AP018827, AP018828]
396451
396535
+
Leu
GAG
-
¡û
>W09133880
ACQR01000028
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [ACQR]
7395
7479
+
Leu
GAG
[ENA]
¡û
>W141814296
JQGB01000002
Alphaproteobacteria
Devosia sp. 17-2-E-8 [JQGB]
140789
140705
-
Leu
GAG
[ENA]
¡û
>W141814344
JQGC01000005
Alphaproteobacteria
Devosia riboflavina [JQGC]
95860
95944
+
Leu
GAG
[ENA]
¡û
>W1810273184
PSNV01000020
Alphaproteobacteria
Kaistia algarum LYH11 [PSNV]
49339
49423
+
Leu
GAG
[ENA]
¡û
>W1810426194
PYVZ01000004
Alphaproteobacteria
Devosia indica IO390501 [PYVZ]
110937
111021
+
Leu
GAG
[ENA]
¡û
>W1810576896
QENV01000002
Alphaproteobacteria
Devosia sp. PTEAB7WZ [QENV]
491271
491355
+
Leu
GAG
[ENA]
¡û
>C151079193
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
1953169
1953085
-
Leu
GAG
[Ensembl]
¡û
>C11100672
CP002395
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [CP002395, CP002396]
1161429
1161513
+
Leu
GAG
[Ensembl]
¡û
>W1511541944
JZEX01000121
Alphaproteobacteria
Devosia geojensis BD-c194 [JZEX]
20306
20222
-
Leu
GAG
[ENA]
¡û
>W1511541977
JZEY01000054
Alphaproteobacteria
Devosia chinhatensis IPL18 [JZEY]
1590618
1590534
-
Leu
GAG
[ENA]
¡û
>W1511568665
LAJG01000023
Alphaproteobacteria
Devosia soli GH2-10 [LAJG]
15052
15136
+
Leu
GAG
[ENA]
¡û
>W1511573992
LANK01000022
Alphaproteobacteria
Devosia subaequoris HST3-14 [LANK]
412947
413031
+
Leu
GAG
[ENA]
¡û
>C161047971
CP012945
Alphaproteobacteria
Devosia sp. A16 [CP012945]
4637979
4637895
-
Leu
GAG
-
¡û
>W1610722541
LMCR01000016
Alphaproteobacteria
Devosia sp. Root105 [LMCR]
35509
35425
-
Leu
GAG
[ENA]
¡û
>W1610724291
LMEA01000007
Alphaproteobacteria
Devosia sp. Root413D1 [LMEA]
609651
609567
-
Leu
GAG
[ENA]
¡û
>W1610728719
LMHK01000001
Alphaproteobacteria
Devosia sp. Root685 [LMHK]
844748
844664
-
Leu
GAG
[ENA]
¡û
>W1610734245
LMLO01000021
Alphaproteobacteria
Devosia sp. Leaf64 [LMLO]
727352
727436
+
Leu
GAG
[ENA]
¡û
>W1610740585
LMQU01000001
Alphaproteobacteria
Devosia sp. Leaf420 [LMQU]
103678
103594
-
Leu
GAG
[ENA]
¡û
>W1610977539
LVVY01000137
Alphaproteobacteria
Devosia elaeis S37 [LVVY]
4914
4830
-
Leu
GAG
[ENA]
¡û
>W1710579487
FPCK01000001
Alphaproteobacteria
Devosia crocina [FPCK]
1828249
1828165
-
Leu
GAG
[ENA]
¡û
>W1710582169
FPKU01000001
Alphaproteobacteria
Devosia enhydra [FPKU]
948187
948103
-
Leu
GAG
[ENA]
¡û
>W1710583195
FQUP01000003
Alphaproteobacteria
Kaistia soli DSM 19436 [FQUP]
650565
650481
-
Leu
GAG
[ENA]
¡û
>W1710609380
FXWK01000001
Alphaproteobacteria
Devosia lucknowensis [FXWK]
996450
996534
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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