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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118653 (28 seq.)
>W1710858985
LMBR01000059
Chlorobiota
Chlorobium limicola [LMBR]
150
232
+
Leu
GAG
[ENA]
¡û
>W1711626087
MPJE01000066
Chlorobiota
Chlorobium sp. KB01 [MPJE]
49751
49669
-
Leu
GAG
[ENA]
¡û
>C171049446
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
447084
447168
+
Leu
GAG
-
¡û
>C005293
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
539576
539657
+
Leu
GAG
[Ensembl]
¡û
>C006579
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
436115
436196
+
Leu
GAG
[Ensembl]
¡û
>w018031
AASE01000006
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
2372
2288
-
Leu
GAG
[ENA]
¡û
>w007194
AAIK01000009
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [AAIK]
60600
60684
+
Leu
GAG
[ENA]
¡û
>w007179
AAIJ01000034
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
7726
7642
-
Leu
GAG
[ENA]
¡û
>w006963
AAIC01000030
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
7962
7878
-
Leu
GAG
[ENA]
¡û
>w006109
AAHJ01000007
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
5376
5290
-
Leu
GAG
[ENA]
¡û
>WENV181232302
OFEN01000004
[OFEN] coral metagenome; NA
39753
39835
+
Leu
GAG
[ENA]
¢þ
>WENV181232316
OFEN01000024
[OFEN] coral metagenome; NA
10150
10068
-
Leu
GAG
[ENA]
¢þ
>WENV181233208
OFES01000003
[OFES] coral metagenome; NA
74885
74967
+
Leu
GAG
[ENA]
¢þ
>WENV181233227
OFES01000012
[OFES] coral metagenome; NA
85871
85953
+
Leu
GAG
[ENA]
¢þ
>WENV181303849
OFHR01000006
[OFHR] coral metagenome; NA
52682
52600
-
Leu
GAG
[ENA]
¢þ
>C08003494
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
359430
359512
+
Leu
GAG
[Ensembl]
¡û
>C08003635
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
450290
450372
+
Leu
GAG
[Ensembl]
¡û
>C08007688
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
412331
412413
+
Leu
GAG
[Ensembl]
¡û
>C08007154
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
426313
426395
+
Leu
GAG
[Ensembl]
¡û
>WENV183512882
OMKS01001668
[OMKS] sediment metagenome; hot spring sediment
2475
2393
-
Leu
GAG
[ENA]
¢þ
>WENV170624644
FUWD013184439
[FUWD] metagenome; unknown
13001
12919
-
Leu
GAG
[ENA]
¢þ
>WENV170632925
FUWD013388832
[FUWD] metagenome; unknown
13001
12919
-
Leu
GAG
[ENA]
¢þ
>C181068771
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
460086
460168
+
Leu
GAG
-
¡û
>W09102673
AAIB01000038
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
1083
1001
-
Leu
GAG
[ENA]
¡û
>W1810062183
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
2521849
2521767
-
Leu
GAG
[ENA]
¡û
>W1810062219
PDNY01000003
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
118213
118295
+
Leu
GAG
[ENA]
¡û
>W1810062266
PDNZ01000003
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
85907
85825
-
Leu
GAG
[ENA]
¡û
>W1610721331
LMBR01000059
Chlorobiota
Chlorobium limicola [LMBR]
150
232
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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