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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118670 (30 seq.)
>W1710876168
LMOZ01000003
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
556791
556705
-
Leu
CAG
[ENA]
¡û
>W1710921191
LNZG01000048
Actinomycetota
Leifsonia xyli subsp. xyli [LNZG]
94860
94946
+
Leu
CAG
[ENA]
¡û
>W131110227
APJM01000011
Actinomycetota
Leucobacter sp. UCD-THU [APJM]
213418
213504
+
Leu
CAG
[ENA]
¡û
>W131162241
AQYK01000001
Actinomycetota
Leifsonia sp. 109 [AQYK]
125157
125241
+
Leu
CAG
[ENA]
¡û
>W131184637
ARTB01000002
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
1100661
1100577
-
Leu
CAG
[ENA]
¡û
>W131218519
ATXU01000007
Actinomycetota
Leucobacter chironomi DSM 19883 [ATXU]
85175
85261
+
Leu
CAG
[ENA]
¡û
>W1711505428
MKVM01000003
Actinomycetota
Micrococcales bacterium 72-143 [MKVM]
566776
566690
-
Leu
CAG
[ENA]
¡û
>C171111572
CP020715
Actinomycetota
Cnuibacter physcomitrellae [CP020715]
26017
26101
+
Leu
CAG
-
¡û
>C012807
AE016822
Actinomycetota
Leifsonia xyli subsp. xyli str. CTCB07 [AE016822]
28490
28576
+
Leu
CAG
[Ensembl]
¡û
>WENV180291250
OBIV01025331
[OBIV] soil metagenome; Clay
373
289
-
Leu
CAG
[ENA]
¢þ
>WENV180370748
OBOH01198440
[OBOH] marine metagenome; ENVO:00002010
229
145
-
Leu
CAG
[ENA]
¢þ
>W141188687
AYMV01000032
Actinomycetota
Leucobacter sp. PH1c [AYMV]
76341
76255
-
Leu
CAG
[ENA]
¡û
>W141223264
BADC01000239
Actinomycetota
Corynebacterium-like bacterium B27 [BADC]
2748
2662
-
Leu
CAG
[ENA]
¡û
>C181001427
AP017315
Actinomycetota
Microcella alkaliphila JAM AC0309 [AP017315]
255652
255736
+
Leu
CAG
-
¡û
>C181143713
CP026923
Actinomycetota
Pontimonas salivibrio CL-TW6 [CP026923]
183631
183715
+
Leu
CAG
-
¡û
>C181196622
CP031192
Actinomycetota
Humibacter sp. BT305 [CP031192]
494917
494833
-
Leu
CAG
-
¡û
>C191056057
CP027942
Actinomycetota
Agrococcus sp. SGAir0287 [CP027942]
33655
33739
+
Leu
CAG
-
¡û
>C191134143
CP035037
Actinomycetota
Leucobacter muris DSM 101948 [CP035037]
31230
31314
+
Leu
CAG
-
¡û
>C191146783
CP035806
Actinomycetota
Leucobacter triazinivorans JW-1 [CP035806]
1909595
1909511
-
Leu
CAG
-
¡û
>W1910831741
MWZD01000012
Actinomycetota
Leucobacter massiliensis 122RC15 [MWZD]
72232
72316
+
Leu
CAG
[ENA]
¡û
>W1810090132
PGFF01000001
Actinomycetota
Diaminobutyricimonas aerilata DSM 27393 [PGFF]
3492492
3492576
+
Leu
CAG
[ENA]
¡û
>W1810392912
PYAU01000001
Actinomycetota
Labedella gwakjiensis DSM 21548 [PYAU]
1721766
1721850
+
Leu
CAG
[ENA]
¡û
>W1810684448
QKXI01000003
Actinomycetota
Leifsonia sp. ku-ls [QKXI]
227308
227224
-
Leu
CAG
[ENA]
¡û
>W1810917675
QWBV01000027
Actinomycetota
Leucobacter sp. wl10 [QWBV]
26088
26004
-
Leu
CAG
[ENA]
¡û
>WENV039647
AACY022024671
Marine microbial communities from Global Ocean Sampling (GOS)
518
430
-
Leu
CAG
[ENA]
>W1511013943
JHEI01000134
Actinomycetota
Leucobacter celer CBX151 [JHEI]
192343
192259
-
Leu
CAG
[ENA]
¡û
>W1610069761
BCST01000003
Actinomycetota
Herbiconiux solani NBRC 106740 [BCST]
387483
387567
+
Leu
CAG
[ENA]
¡û
>W1610738514
LMOZ01000003
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
556791
556705
-
Leu
CAG
[ENA]
¡û
>W1710067134
BCST01000003
Actinomycetota
Herbiconiux solani NBRC 106740 [BCST]
387483
387567
+
Leu
CAG
[ENA]
¡û
>W1710532016
FNPZ01000001
Actinomycetota
Herbiconiux ginsengi [FNPZ]
1141263
1141177
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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