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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118746 (61 seq.)
>W1710979344
LPNY01000042
Campylobacterota
Arcobacter sp. EP1 [LPNY]
294772
294856
+
Leu
TAG
[ENA]
¡û
>W1711484268
MKCO01000003
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
343394
343478
+
Leu
TAG
[ENA]
¡û
>WENV180583199
OCNB01009975
[OCNB] metagenome; diffuse fluid
548
632
+
Leu
TAG
[ENA]
¢þ
>WENV180592760
OCOW01054672
[OCOW] marine metagenome; Sterivex cartridges
177
93
-
Leu
TAG
[ENA]
¢þ
>WENV181206691
OFAW01002205
[OFAW] metagenome; hydrothermal vent
1794
1710
-
Leu
TAG
[ENA]
¢þ
>WENV181210645
OFBH01018122
[OFBH] metagenome; hydrothermal vent
182
266
+
Leu
TAG
[ENA]
¢þ
>WENV181223811
OFDD01000530
[OFDD] metagenome; hydrothermal vent
4909
4993
+
Leu
TAG
[ENA]
¢þ
>WENV181835589
OGVI01004600
[OGVI] freshwater metagenome; freshwater
1131
1215
+
Leu
TAG
[ENA]
¢þ
>WENV183709799
PDWI01034288
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4422
4506
+
Leu
TAG
[ENA]
¢þ
>WENV183710740
PDWI01052627
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3590
3674
+
Leu
TAG
[ENA]
¢þ
>WENV183712119
PDWI01089577
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
89
5
-
Leu
TAG
[ENA]
¢þ
>WENV183713333
PDWI01134624
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
50
134
+
Leu
TAG
[ENA]
¢þ
>WENV183714219
PDWI01173806
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1444
1360
-
Leu
TAG
[ENA]
¢þ
>WENV183719809
PDWJ01020635
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1314
1230
-
Leu
TAG
[ENA]
¢þ
>WENV183722002
PDWJ01099169
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1331
1247
-
Leu
TAG
[ENA]
¢þ
>WENV183722617
PDWJ01143325
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
97
13
-
Leu
TAG
[ENA]
¢þ
>WENV170012735
ASRN01006506
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
200
116
-
Leu
TAG
[ENA]
¢þ
>WENV170012743
ASRO01000003
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
31223
31139
-
Leu
TAG
[ENA]
¢þ
>WENV170012845
ASRP01000866
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1309
1225
-
Leu
TAG
[ENA]
¢þ
>WENV170012927
ASRQ01000008
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
31223
31139
-
Leu
TAG
[ENA]
¢þ
>WENV170013014
ASRR01000022
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
31213
31129
-
Leu
TAG
[ENA]
¢þ
>WENV170014354
AYRE01005791
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
97
181
+
Leu
TAG
[ENA]
¢þ
>WENV170014437
AYRG01000076
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
31223
31139
-
Leu
TAG
[ENA]
¢þ
>WENV170576112
FPIB01000017
[FPIB] hydrothermal vent metagenome genome assembly, contig: NODE_30.; water
66866
66950
+
Leu
TAG
[ENA]
¢þ
>WENV170635562
JDSG01000081
[JDSG] bioreactor metagenome; continuous culture bioreactor short generation time transfer1; day 52 after inoculation
7188
7104
-
Leu
TAG
[ENA]
¢þ
>WENV170646374
JQGR01000348
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
371
287
-
Leu
TAG
[ENA]
¢þ
>WENV170779350
LZQN01001642
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
258
174
-
Leu
TAG
[ENA]
¢þ
>C181196921
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
227997
228081
+
Leu
TAG
-
¡û
>C181196970
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
229978
230062
+
Leu
TAG
-
¡û
>C181197033
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
249335
249419
+
Leu
TAG
-
¡û
>C191084480
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
226369
226453
+
Leu
TAG
-
¡û
>C191084646
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
265048
265132
+
Leu
TAG
-
¡û
>C191147175
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
215869
215953
+
Leu
TAG
-
¡û
>C191186391
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
309912
309996
+
Leu
TAG
-
¡û
>W1911413073
NWVW01000014
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
21193
21109
-
Leu
TAG
[ENA]
¡û
>W1911413102
NWVX01000012
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
7395
7311
-
Leu
TAG
[ENA]
¡û
>W1911419393
NXAO01000052
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
25361
25445
+
Leu
TAG
[ENA]
¡û
>W1911424186
NXFY01000024
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
589
505
-
Leu
TAG
[ENA]
¡û
>W1911426193
NXID01000027
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
804
720
-
Leu
TAG
[ENA]
¡û
>W1911426231
NXIE01000003
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
131092
131008
-
Leu
TAG
[ENA]
¡û
>W1911426285
NXIF01000034
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
58309
58393
+
Leu
TAG
[ENA]
¡û
>W1911576147
PDJU01000006
Campylobacterota
Arcobacter sp. F155 [PDJU]
64940
65024
+
Leu
TAG
[ENA]
¡û
>W1911576269
PDJW01000074
Campylobacterota
Malaciobacter mytili T234 [PDJW]
824
740
-
Leu
TAG
[ENA]
¡û
>W1911576314
PDJX01000023
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
37360
37444
+
Leu
TAG
[ENA]
¡û
>W1911576380
PDJY01000044
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
7444
7360
-
Leu
TAG
[ENA]
¡û
>W1911576509
PDKC01000035
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
21937
22021
+
Leu
TAG
[ENA]
¡û
>W1911576579
PDKE01000004
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
110605
110689
+
Leu
TAG
[ENA]
¡û
>W1911576613
PDKF01000002
Campylobacterota
Arcobacter sp. CECT 8983 [PDKF]
350648
350732
+
Leu
TAG
[ENA]
¡û
>W1911576680
PDKG01000014
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
40117
40201
+
Leu
TAG
[ENA]
¡û
>W1911576788
PDKJ01000007
Campylobacterota
Halarcobacter ebronensis CECT 8993 [PDKJ]
66998
66914
-
Leu
TAG
[ENA]
¡û
>W1911576821
PDKK01000001
Campylobacterota
Halarcobacter ebronensis CECT 8441 [PDKK]
415788
415872
+
Leu
TAG
[ENA]
¡û
>W1911576873
PDKL01000005
Campylobacterota
Halarcobacter bivalviorum F118-4 [PDKL]
114295
114211
-
Leu
TAG
[ENA]
¡û
>W1911576917
PDKM01000005
Campylobacterota
Halarcobacter bivalviorum CECT 7835 [PDKM]
94954
95038
+
Leu
TAG
[ENA]
¡û
>W1911576967
PDKN01000003
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
11857
11773
-
Leu
TAG
[ENA]
¡û
>W1911576998
PDKO01000002
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
314349
314433
+
Leu
TAG
[ENA]
¡û
>W1810295916
PTIW01000022
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
664
580
-
Leu
TAG
[ENA]
¡û
>W1810462567
PZYW01000004
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
342030
342114
+
Leu
TAG
[ENA]
¡û
>W1511327934
JQIS01000061
Campylobacterota
Sulfurovum sp. FS08-3 [JQIS]
11249
11165
-
Leu
TAG
[ENA]
¡û
>W1511517375
JXXG01000001
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
1303075
1302991
-
Leu
TAG
[ENA]
¡û
>W1610835335
LPNY01000042
Campylobacterota
Arcobacter sp. EP1 [LPNY]
294772
294856
+
Leu
TAG
[ENA]
¡û
>W1710602839
FUYO01000020
Campylobacterota
Malaciobacter marinus [FUYO]
51049
51133
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK