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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118920 (54 seq.)
>W131177272
ARKQ01000048
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
205472
205388
-
Leu
TAG
[ENA]
¡û
>W1711947650
NBOF01000003
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
558967
558883
-
Leu
TAG
[ENA]
¡û
>W1711947703
NBOG01000002
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
387163
387079
-
Leu
TAG
[ENA]
¡û
>W1711947706
NBOG01000002
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
386750
386666
-
Leu
TAG
[ENA]
¡û
>C171034445
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
615718
615802
+
Leu
TAG
-
¡û
>C171034555
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
3591933
3591849
-
Leu
TAG
-
¡û
>C171034558
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
3591412
3591328
-
Leu
TAG
-
¡û
>C171108408
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
874150
874066
-
Leu
TAG
-
¡û
>C006812
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
3699902
3699986
+
Leu
TAG
[Ensembl]
¡û
>C006815
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
3700294
3700378
+
Leu
TAG
[Ensembl]
¡û
>WENV180042178
LNFX01002340
[LNFX] marine sediment metagenome; antarctic beach sand mud
1137
1221
+
Leu
TAG
[ENA]
¢þ
>WENV182543030
OJAZ01017942
[OJAZ] seawater metagenome; Sea water
247
331
+
Leu
TAG
[ENA]
¢þ
>WENV182543046
OJAZ01021303
[OJAZ] seawater metagenome; Sea water
334
250
-
Leu
TAG
[ENA]
¢þ
>WENV182543546
OJBB01003434
[OJBB] seawater metagenome; Sea water
1816
1900
+
Leu
TAG
[ENA]
¢þ
>WENV182559155
OJDO01002740
[OJDO] seawater metagenome; Sea water
1737
1653
-
Leu
TAG
[ENA]
¢þ
>WENV182567392
OJEO01000371
[OJEO] seawater metagenome; Sea water
14177
14261
+
Leu
TAG
[ENA]
¢þ
>WENV182567747
OJEP01000124
[OJEP] seawater metagenome; Sea water
4591
4507
-
Leu
TAG
[ENA]
¢þ
>WENV182568861
OJEX01000164
[OJEX] seawater metagenome; Sea water
10281
10197
-
Leu
TAG
[ENA]
¢þ
>WENV182576947
OJGB01002059
[OJGB] seawater metagenome; Sea water
5
89
+
Leu
TAG
[ENA]
¢þ
>WENV182576949
OJGB01002059
[OJGB] seawater metagenome; Sea water
313
397
+
Leu
TAG
[ENA]
¢þ
>WENV182577418
OJGE01005029
[OJGE] seawater metagenome; Sea water
579
663
+
Leu
TAG
[ENA]
¢þ
>WENV182577691
OJGH01001144
[OJGH] seawater metagenome; Sea water
4676
4760
+
Leu
TAG
[ENA]
¢þ
>WENV182577822
OJGJ01001668
[OJGJ] seawater metagenome; Sea water
154
238
+
Leu
TAG
[ENA]
¢þ
>WENV182578595
OJGO01002525
[OJGO] seawater metagenome; Sea water
2001
2085
+
Leu
TAG
[ENA]
¢þ
>WENV182578848
OJGP01006922
[OJGP] seawater metagenome; Sea water
357
273
-
Leu
TAG
[ENA]
¢þ
>WENV182586460
OJHK01000522
[OJHK] seawater metagenome; Sea water
23688
23772
+
Leu
TAG
[ENA]
¢þ
>WENV182588326
OJHR01003200
[OJHR] seawater metagenome; Sea water
216
300
+
Leu
TAG
[ENA]
¢þ
>WENV182588328
OJHR01003200
[OJHR] seawater metagenome; Sea water
524
608
+
Leu
TAG
[ENA]
¢þ
>WENV182592706
OJIR01011701
[OJIR] seawater metagenome; Sea water
1104
1188
+
Leu
TAG
[ENA]
¢þ
>WENV183057722
OLHM01001379
[OLHM] seawater metagenome; Sea water
4387
4471
+
Leu
TAG
[ENA]
¢þ
>WENV183057881
OLHM01016093
[OLHM] seawater metagenome; Sea water
218
302
+
Leu
TAG
[ENA]
¢þ
>WENV170304153
CESI01023423
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
176
92
-
Leu
TAG
[ENA]
¢þ
>WENV170304859
CESI01085020
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
153
237
+
Leu
TAG
[ENA]
¢þ
>WENV170537346
CEWR01000824
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
472
388
-
Leu
TAG
[ENA]
¢þ
>WENV170704358
LLEJ01004755
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
339
255
-
Leu
TAG
[ENA]
¢þ
>WENV170781045
MAAB01029200
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
974
890
-
Leu
TAG
[ENA]
¢þ
>WENV170781048
MAAB01029200
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
415
331
-
Leu
TAG
[ENA]
¢þ
>WENV170781098
MAAB01029384
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
41268
41184
-
Leu
TAG
[ENA]
¢þ
>WENV170781138
MAAB01029465
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4076
4160
+
Leu
TAG
[ENA]
¢þ
>WENV170781141
MAAB01029465
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4475
4559
+
Leu
TAG
[ENA]
¢þ
>WENV170783258
MAAC01015395
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
299
383
+
Leu
TAG
[ENA]
¢þ
>WENV170783261
MAAC01015395
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
858
942
+
Leu
TAG
[ENA]
¢þ
>WENV170825257
MDSY01089736
[MDSY] marine metagenome; seawater
2542
2626
+
Leu
TAG
[ENA]
¢þ
>C181169975
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
1152411
1152327
-
Leu
TAG
-
¡û
>W1810155349
PJAQ01000017
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
299645
299729
+
Leu
TAG
[ENA]
¡û
>W1810155539
PJAU01000032
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
257376
257460
+
Leu
TAG
[ENA]
¡û
>W1810155542
PJAU01000032
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
257905
257989
+
Leu
TAG
[ENA]
¡û
>W1810156027
PJBA01000006
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
378921
378837
-
Leu
TAG
[ENA]
¡û
>W1810156030
PJBA01000006
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
378529
378445
-
Leu
TAG
[ENA]
¡û
>W1810735859
QOLD01000003
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
99514
99598
+
Leu
TAG
[ENA]
¡û
>W1511322858
JQEC01000011
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
115779
115863
+
Leu
TAG
[ENA]
¡û
>W1511322861
JQEC01000011
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
116185
116269
+
Leu
TAG
[ENA]
¡û
>W1511322953
JQED01000015
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
100624
100708
+
Leu
TAG
[ENA]
¡û
>W1511322956
JQED01000015
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
101073
101157
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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