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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.119043 (61 seq.)
>W131249959
CAUE01000104
Gammaproteobacteria
Coxiella burnetii Z3055 [CAUE]
21371
21290
-
Leu
GAG
[ENA]
¡û
>W131251129
CAVF010000020
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [CAVF]
180875
180794
-
Leu
GAG
[ENA]
¡û
>C171071283
CP018005
Gammaproteobacteria
Coxiella burnetii RSA439 [CP018005]
1375756
1375675
-
Leu
GAG
-
¡û
>C171073866
CP018150
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [CP018150]
532091
532172
+
Leu
GAG
-
¡û
>C171110913
CP020616
Gammaproteobacteria
Coxiella burnetii RSA 439 [CP020616]
1375743
1375662
-
Leu
GAG
-
¡û
>C171127858
HG825990
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [HG825990]
1402075
1401994
-
Leu
GAG
-
¡û
>C005231
AE016828
Gammaproteobacteria
Coxiella burnetii RSA 493 [AE016828]
1401806
1401725
-
Leu
GAG
[Ensembl]
¡û
>w024157
AAYJ01000010
Gammaproteobacteria
Coxiella burnetii RSA 334 [AAYJ]
24669
24585
-
Leu
GAG
[ENA]
¡û
>w020068
AAUP01000006
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [AAUP]
46279
46363
+
Leu
GAG
[ENA]
¡û
>w016771
AAQO01000025
Gammaproteobacteria
Coxiella burnetii RSA 331 [AAQO]
29124
29040
-
Leu
GAG
[ENA]
¡û
>w016647
AAQI01000017
Gammaproteobacteria
Coxiella burnetii Dugway 7E9-12 [AAQI] Dugway 7E9-12 [AAQI]
10179
10263
+
Leu
GAG
[ENA]
¡û
>W141027236
AKYP01000102
Gammaproteobacteria
Coxiella burnetii cb109 [AKYP]
319
400
+
Leu
GAG
[ENA]
¡û
>C08002995
CP000733
Gammaproteobacteria
Coxiella burnetii Dugway 5J108-111 [CP000733]
523124
523205
+
Leu
GAG
[Ensembl]
¡û
>C08003057
CP000890
Gammaproteobacteria
Coxiella burnetii RSA 331 [CP000890]
1482387
1482306
-
Leu
GAG
[Ensembl]
¡û
>W141254787
CBTH010000103
Gammaproteobacteria
Coxiella burnetii Cb185 [CBTH]
41311
41230
-
Leu
GAG
[ENA]
¡û
>W141260676
CCAH010000019
Gammaproteobacteria
Coxiella burnetii [CCAH]
179793
179712
-
Leu
GAG
[ENA]
¡û
>W141260718
CCAI010000021
Gammaproteobacteria
Coxiella burnetii [CCAI]
179793
179712
-
Leu
GAG
[ENA]
¡û
>W141260759
CCAJ010000042
Gammaproteobacteria
Coxiella burnetii [CCAJ]
22293
22212
-
Leu
GAG
[ENA]
¡û
>W141260804
CCAK010000136
Gammaproteobacteria
Coxiella burnetii [CCAK]
14647
14566
-
Leu
GAG
[ENA]
¡û
>W141260853
CCAL010000019
Gammaproteobacteria
Coxiella burnetii [CCAL]
179651
179570
-
Leu
GAG
[ENA]
¡û
>W141260894
CCAM010000064
Gammaproteobacteria
Coxiella burnetii [CCAM]
21616
21535
-
Leu
GAG
[ENA]
¡û
>W141267596
CCNR01000025
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCNR]
31277
31358
+
Leu
GAG
[ENA]
¡û
>WENV170652383
JRYH01001860
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
36247
36331
+
Leu
GAG
[ENA]
¢þ
>C191091532
CP032542
Gammaproteobacteria
Coxiella burnetii 2014-PE-15890 [CP032542]
898762
898843
+
Leu
GAG
-
¡û
>C191134932
CP035112
Gammaproteobacteria
Coxiella burnetii nine mile phase II [CP035112]
1660421
1660340
-
Leu
GAG
-
¡û
>C191174670
CP040059
Gammaproteobacteria
Coxiella burnetii RSA439 [CP040059]
1375614
1375533
-
Leu
GAG
-
¡û
>W141810526
JPVV01000016
Gammaproteobacteria
Coxiella burnetii [JPVV]
1683
1764
+
Leu
GAG
[ENA]
¡û
>C09102972
CP001019
Gammaproteobacteria
Coxiella burnetii CbuG_Q212 [CP001019]
525478
525559
+
Leu
GAG
[Ensembl]
¡û
>C09103018
CP001020
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 [CP001020]
532094
532175
+
Leu
GAG
[Ensembl]
¡û
>W1911118945
NOLM01000009
Gammaproteobacteria
Coxiella burnetii Dugway 7E65-68 [NOLM]
8372
8453
+
Leu
GAG
[ENA]
¡û
>W1911118987
NOLN01000009
Gammaproteobacteria
Coxiella burnetii Dugway 7D77-80 [NOLN]
8442
8523
+
Leu
GAG
[ENA]
¡û
>W1911119060
NOLO01000015
Gammaproteobacteria
Coxiella burnetii Turkey RSA315 [NOLO]
180736
180655
-
Leu
GAG
[ENA]
¡û
>W1911119071
NOLP01000018
Gammaproteobacteria
Coxiella burnetii Ko Q229 [NOLP]
31400
31481
+
Leu
GAG
[ENA]
¡û
>W1911119144
NOLQ01000015
Gammaproteobacteria
Coxiella burnetii Dyer RSA345 [NOLQ]
180722
180641
-
Leu
GAG
[ENA]
¡û
>W1911119186
NOLR01000018
Gammaproteobacteria
Coxiella burnetii Idaho Goat Q195 [NOLR]
179704
179623
-
Leu
GAG
[ENA]
¡û
>W1911119228
NOLS01000015
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA338 [NOLS]
180736
180655
-
Leu
GAG
[ENA]
¡û
>W1911119270
NOLT01000015
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA270 [NOLT]
180736
180655
-
Leu
GAG
[ENA]
¡û
>W1911119312
NOLU01000016
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 [NOLU]
180736
180655
-
Leu
GAG
[ENA]
¡û
>W1911119354
NOLV01000015
Gammaproteobacteria
Coxiella burnetii California 33 RSA329 [NOLV]
180736
180655
-
Leu
GAG
[ENA]
¡û
>W1911136653
NOVF01000015
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 clone 2 [NOVF]
180736
180655
-
Leu
GAG
[ENA]
¡û
>W1911136695
NOVG01000016
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA514 [NOVG]
180664
180583
-
Leu
GAG
[ENA]
¡û
>W1911136737
NOVH01000016
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA363 [NOVH]
180736
180655
-
Leu
GAG
[ENA]
¡û
>W1911136780
NOVI01000035
Gammaproteobacteria
Coxiella burnetii M44 RSA461 [NOVI]
21470
21389
-
Leu
GAG
[ENA]
¡û
>W1911136821
NOVJ01000015
Gammaproteobacteria
Coxiella burnetii Australia RSA425 [NOVJ]
180736
180655
-
Leu
GAG
[ENA]
¡û
>W1911136863
NOVK01000015
Gammaproteobacteria
Coxiella burnetii Australia RSA297 [NOVK]
180736
180655
-
Leu
GAG
[ENA]
¡û
>W1810059858
PDLP01000033
Gammaproteobacteria
Coxiella burnetii Leningrad-2 [PDLP]
21555
21474
-
Leu
GAG
[ENA]
¡û
>W1810235672
PPFM01000002
Gammaproteobacteria
Coxiella burnetii Q559 [PPFM]
37639
37720
+
Leu
GAG
[ENA]
¡û
>W1810235713
PPFN01000002
Gammaproteobacteria
Coxiella burnetii Q556 [PPFN]
37639
37720
+
Leu
GAG
[ENA]
¡û
>W1810235756
PPFO01000002
Gammaproteobacteria
Coxiella burnetii Q545 [PPFO]
42514
42595
+
Leu
GAG
[ENA]
¡û
>W1810235799
PPFP01000012
Gammaproteobacteria
Coxiella burnetii Q540 [PPFP]
16272
16353
+
Leu
GAG
[ENA]
¡û
>W1810235840
PPFQ01000002
Gammaproteobacteria
Coxiella burnetii Q532 [PPFQ]
179698
179617
-
Leu
GAG
[ENA]
¡û
>W1810235898
PPFR01000010
Gammaproteobacteria
Coxiella burnetii Cb3506 [PPFR]
21468
21387
-
Leu
GAG
[ENA]
¡û
>C151077681
CP011126
Gammaproteobacteria
Candidatus Coxiella mudrowiae CRt [CP011126]
383841
383925
+
Leu
GAG
[Ensembl]
¡û
>C151102385
LK937696
Gammaproteobacteria
Coxiella burnetii Z3055 [LK937696]
1402002
1401921
-
Leu
GAG
-
¡û
>W1510060739
CCXO01000002
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 Cb196_Saudi_Arabia [CCXO]
1543
1624
+
Leu
GAG
[ENA]
¡û
>W1510061116
CCYB01000025
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCYB]
31277
31358
+
Leu
GAG
[ENA]
¡û
>W1510064639
CDBG01000001
Gammaproteobacteria
Coxiella burnetii RSA 493 Cb171_QLYMPHOMA [CDBG]
1477824
1477743
-
Leu
GAG
[ENA]
¡û
>W1511555136
JZWL01000002
Gammaproteobacteria
Coxiella burnetii NL-Limburg [JZWL]
121110
121029
-
Leu
GAG
[ENA]
¡û
>C161017338
CP007555
Gammaproteobacteria
Coxiella burnetii str. Namibia [CP007555]
531066
531147
+
Leu
GAG
[Ensembl]
¡û
>C161059038
CP013667
Gammaproteobacteria
Coxiella burnetii 3262 [CP013667]
898842
898923
+
Leu
GAG
-
¡û
>C161071904
CP014354
Gammaproteobacteria
Coxiella burnetii 3345937 [CP014354]
843002
843083
+
Leu
GAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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