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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.119073 (24 seq.)
>W1711069398
LSFP01000002
Alphaproteobacteria
Zymomonas mobilis [LSFP]
401615
401699
+
Leu
TAG
[ENA]
¡û
>C171115167
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
296247
296163
-
Leu
TAG
-
¡û
>W131046806
AMSR01000006
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
401372
401456
+
Leu
TAG
[ENA]
¡û
>C027923
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
963135
963219
+
Leu
TAG
[Ensembl]
¡û
>WENV180028170
FTJA01001366
[FTJA] metagenome; soil
375
291
-
Leu
TAG
[ENA]
¢þ
>WENV180034212
FTKP01016932
[FTKP] metagenome; soil
229
145
-
Leu
TAG
[ENA]
¢þ
>WENV170009549
APMI01000694
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
3354
3438
+
Leu
TAG
[ENA]
¢þ
>C181088859
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
965505
965589
+
Leu
TAG
-
¡û
>C181088910
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
965505
965589
+
Leu
TAG
-
¡û
>C181089237
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
965505
965589
+
Leu
TAG
-
¡û
>C191145584
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
963104
963188
+
Leu
TAG
-
¡û
>C191145635
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
963104
963188
+
Leu
TAG
-
¡û
>C191145686
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
963104
963188
+
Leu
TAG
-
¡û
>W09133965
ACQU01000004
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
84650
84566
-
Leu
TAG
[ENA]
¡û
>W1910182415
BJMW01000007
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
104958
105042
+
Leu
TAG
[ENA]
¡û
>W1910182452
BJMX01000001
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
44582
44498
-
Leu
TAG
[ENA]
¡û
>C141008824
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
411394
411310
-
Leu
TAG
[Ensembl]
¡û
>C151004626
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
411169
411085
-
Leu
TAG
[Ensembl]
¡û
>C151004677
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
411169
411085
-
Leu
TAG
[Ensembl]
¡û
>C10114610
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
408891
408807
-
Leu
TAG
[Ensembl]
¡û
>C11124250
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
367727
367643
-
Leu
TAG
[Ensembl]
¡û
>C121003168
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
407082
406998
-
Leu
TAG
[Ensembl]
¡û
>C121015284
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
403894
403810
-
Leu
TAG
[Ensembl]
¡û
>W1610909926
LSFP01000002
Alphaproteobacteria
Zymomonas mobilis [LSFP]
401615
401699
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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