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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.119279 (39 seq.)
>W131205504
ATDT01000021
Gammaproteobacteria
Cedecea davisae DSM 4568 [ATDT]
153132
153216
+
Tyr
GTA
[ENA]
¡û
>W131205505
ATDT01000021
Gammaproteobacteria
Cedecea davisae DSM 4568 [ATDT]
153273
153357
+
Tyr
GTA
[ENA]
¡û
>W1712020929
NEZL01000064
Gammaproteobacteria
Klebsiella pneumoniae [NEZL]
312969
312885
-
Tyr
GTA
[ENA]
¡û
>WENV182843801
OKIO01000155
[OKIO] human gut metagenome; human gut
34904
34820
-
Tyr
GTA
[ENA]
¢þ
>WENV182850629
OKLF01000007
[OKLF] human gut metagenome; human gut
52283
52199
-
Tyr
GTA
[ENA]
¢þ
>WENV182860800
OKOZ01000020
[OKOZ] human gut metagenome; human gut
27950
27866
-
Tyr
GTA
[ENA]
¢þ
>WENV170002012
AGFT01071632
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
142
58
-
Tyr
GTA
[ENA]
¢þ
>WENV170002082
AGFT01106299
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
245
329
+
Tyr
GTA
[ENA]
¢þ
>WENV170016590
AZMM01003778
[AZMM] human gut metagenome; premature infant gut
206
290
+
Tyr
GTA
[ENA]
¢þ
>C181031829
CP018628
Gammaproteobacteria
Lelliottia jeotgali PFL01 [CP018628]
2497394
2497478
+
Tyr
GTA
-
¡û
>C181051462
CP021329
Gammaproteobacteria
Raoultella ornithinolytica Ro24724 [CP021329]
3662866
3662782
-
Tyr
GTA
-
¡û
>C181083652
CP023525
Gammaproteobacteria
Cedecea neteri FDAARGOS_392 [CP023525]
2054884
2054800
-
Tyr
GTA
-
¡û
>C191201402
LR134230
Gammaproteobacteria
Raoultella ornithinolytica NCTC8846 [LR134229, LR134230]
2054410
2054494
+
Tyr
GTA
-
¡û
>W141741048
JNPD01000007
Gammaproteobacteria
Raoultella ornithinolytica 2-156-04_S1_C2 [JNPD]
705726
705642
-
Tyr
GTA
[ENA]
¡û
>W141741049
JNPD01000007
Gammaproteobacteria
Raoultella ornithinolytica 2-156-04_S1_C2 [JNPD]
705506
705422
-
Tyr
GTA
[ENA]
¡û
>W1910650828
LYLP01000026
Gammaproteobacteria
Scandinavium goeteborgense CCUG 66741 [LYLP]
91429
91513
+
Tyr
GTA
[ENA]
¡û
>W1910897285
NGAJ01000002
Gammaproteobacteria
Raoultella ornithinolytica Ro24362 [NGAJ]
177303
177387
+
Tyr
GTA
[ENA]
¡û
>W1910897353
NGAK01000004
Gammaproteobacteria
Raoultella ornithinolytica Ro24005 [NGAK]
177710
177794
+
Tyr
GTA
[ENA]
¡û
>W1910897443
NGAL01000010
Gammaproteobacteria
Raoultella ornithinolytica Ro23980 [NGAL]
579828
579744
-
Tyr
GTA
[ENA]
¡û
>W1911683347
QKOT01000014
Gammaproteobacteria
Raoultella ornithinolytica GEO_48_Down_B [QKOT]
110109
110193
+
Tyr
GTA
[ENA]
¡û
>W1911684958
QKPM01000006
Gammaproteobacteria
Raoultella ornithinolytica GEO_6_Down_B [QKPM]
110140
110224
+
Tyr
GTA
[ENA]
¡û
>W1911824446
QZWH01000006
Gammaproteobacteria
Buttiauxella izardii CCUG 35510 [QZWH]
345725
345641
-
Tyr
GTA
[ENA]
¡û
>W1911824447
QZWH01000006
Gammaproteobacteria
Buttiauxella izardii CCUG 35510 [QZWH]
345591
345507
-
Tyr
GTA
[ENA]
¡û
>W1810185380
PKFU01000002
Gammaproteobacteria
Lelliottia sp. F159 [PKFU]
45027
45111
+
Tyr
GTA
[ENA]
¡û
>W1810185465
PKFV01000003
Gammaproteobacteria
Lelliottia sp. F154 [PKFV]
45027
45111
+
Tyr
GTA
[ENA]
¡û
>W1810266290
PQVS01000001
Gammaproteobacteria
Lelliottia sp. 7254-16 [PQVS]
505833
505917
+
Tyr
GTA
[ENA]
¡û
>W1810266606
PQVW01000001
Gammaproteobacteria
Lelliottia aquatilis 6331-17 [PQVW]
505833
505917
+
Tyr
GTA
[ENA]
¡û
>W1810315778
PTXT01000002
Gammaproteobacteria
Raoultella ornithinolytica R10311 [PTXT]
177267
177351
+
Tyr
GTA
[ENA]
¡û
>W1810676663
QKME01000001
Gammaproteobacteria
Scandinavium goeteborgense YR018 [QKME]
689628
689712
+
Tyr
GTA
[ENA]
¡û
>W1810676664
QKME01000001
Gammaproteobacteria
Scandinavium goeteborgense YR018 [QKME]
689750
689834
+
Tyr
GTA
[ENA]
¡û
>C151051442
CP009451
Gammaproteobacteria
Cedecea neteri SSMD04 [CP009451]
4817589
4817505
-
Tyr
GTA
[Ensembl]
¡û
>C151051792
CP009459
Gammaproteobacteria
Cedecea neteri ND14a [CP009459]
3644690
3644774
+
Tyr
GTA
[Ensembl]
¡û
>C151076299
CP011077
Gammaproteobacteria
Klebsiella michiganensis RC10 [CP011077]
2693882
2693966
+
Tyr
GTA
[Ensembl]
¡û
>WENV11102084
AGFT01071632
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
142
58
-
Tyr
GTA
[ENA]
¡û
>WENV11102154
AGFT01106299
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
245
329
+
Tyr
GTA
[ENA]
¡û
>W121102544
AKXM01000004
Gammaproteobacteria
Enterobacter sp. Ag1 [AKXM]
351478
351394
-
Tyr
GTA
[ENA]
¡û
>W1610049303
BBEV01000029
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae JCM 20051 [BBEV]
69484
69568
+
Tyr
GTA
[ENA]
¡û
>W1710045702
BBEV01000029
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae JCM 20051 [BBEV]
69484
69568
+
Tyr
GTA
[ENA]
¡û
>W1710608206
FXAS01000002
Gammaproteobacteria
Cedecea sp. NFIX57 [FXAS]
101242
101326
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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