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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.119320 (31 seq.)
>W1711129953
LUUM01000246
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
78113
78197
+
Leu
TAG
[ENA]
¡û
>W1711228832
LXWX01000013
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
4937
4853
-
Leu
TAG
[ENA]
¡û
>C171101476
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
2592025
2592109
+
Leu
TAG
-
¡û
>W131163859
ARAB01000008
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
286657
286573
-
Leu
TAG
[ENA]
¡û
>W131166806
ARCT01000001
Alphaproteobacteria
Methylocystis rosea SV97 [ARCT]
1865734
1865818
+
Leu
TAG
[ENA]
¡û
>W141188908
AYNA01000090
Alphaproteobacteria
Methylocystis sp. SB2 [AYNA]
50881
50797
-
Leu
TAG
[ENA]
¡û
>W141216027
AZUO01000001
Alphaproteobacteria
Methylosinus sp. LW3 [AZUO]
2324865
2324949
+
Leu
TAG
[ENA]
¡û
>W141222913
BACU01000632
Alphaproteobacteria
Azospirillum sp. B4 [BACU]
3667
3751
+
Leu
TAG
[ENA]
¡û
>WENV183660759
ORJL010050639
[ORJL] groundwater metagenome; groundwater
9806
9890
+
Leu
TAG
[ENA]
¢þ
>WENV183694442
ORMF012234043
[ORMF] groundwater metagenome; groundwater
413
497
+
Leu
TAG
[ENA]
¢þ
>C181058324
CP022111
Alphaproteobacteria
Nitrospirillum amazonense CBAmc CBAmC [CP022110, CP022111, CP022112, CP022113]
1618614
1618530
-
Leu
TAG
-
¡û
>C181089634
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
4408001
4407917
-
Leu
TAG
-
¡û
>C191118882
CP034086
Alphaproteobacteria
Methylocystis rosea GW6 [CP034086]
822234
822318
+
Leu
TAG
-
¡û
>W141701390
JMKQ01000006
Alphaproteobacteria
Methylocystis sp. LW5 [JMKQ]
714403
714487
+
Leu
TAG
[ENA]
¡û
>W141803717
JPGX01000319
Alphaproteobacteria
Nitrospirillum amazonense CBAmc [JPGX]
22599
22683
+
Leu
TAG
[ENA]
¡û
>W141821196
JQNK01000002
Alphaproteobacteria
Methylosinus sp. PW1 [JQNK]
308747
308663
-
Leu
TAG
[ENA]
¡û
>W1911148310
NPET01000006
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NPET]
9384
9300
-
Leu
TAG
[ENA]
¡û
>W1911219087
NRRJ01000002
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NRRJ]
221336
221420
+
Leu
TAG
[ENA]
¡û
>W1911747223
QWDD01000001
Alphaproteobacteria
Methylocystis hirsuta CSC1 [QWDD]
1481557
1481641
+
Leu
TAG
[ENA]
¡û
>W1810330584
PUIV01000046
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
10850
10766
-
Leu
TAG
[ENA]
¡û
>W1810397184
PYDU01000003
Alphaproteobacteria
Methylocystis sp. MitZ-2018 [PYDU]
55306
55222
-
Leu
TAG
[ENA]
¡û
>ENV09001102
ABSQ01032488
Freshwater sediment metagenome lwMethenol_C1
145
61
-
Leu
TAG
[ENA]
¡û
>W10118828
ADVE01000020
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
19969
20053
+
Leu
TAG
[ENA]
¡û
>W11125000
ADVE01000020
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
19969
20053
+
Leu
TAG
[ENA]
¡û
>W11150254
AEVM01000026
Alphaproteobacteria
Methylocystis sp. ATCC 49242 [AEVM]
14920
14836
-
Leu
TAG
[ENA]
¡û
>W11157292
AFBX01000920
Alphaproteobacteria
Nitrospirillum amazonense Y2 [AFBX]
1375
1459
+
Leu
TAG
[ENA]
¡û
>W121067971
AJTV01000005
Alphaproteobacteria
Methylocystis parvus OBBP [AJTV]
44609
44693
+
Leu
TAG
[ENA]
¡û
>C131019923
HE956757
Alphaproteobacteria
Methylocystis sp. SC2 [HE956757]
3299007
3299091
+
Leu
TAG
[Ensembl]
¡û
>W1610941026
LUUM01000246
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
78113
78197
+
Leu
TAG
[ENA]
¡û
>W1611012749
LXWX01000013
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
4937
4853
-
Leu
TAG
[ENA]
¡û
>W1710609837
FYDG01000001
Alphaproteobacteria
Rhodoblastus acidophilus [FYDG]
701329
701245
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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