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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.119321 (63 seq.)
>W1710803944
LJYW01000001
Alphaproteobacteria
Prosthecomicrobium hirschii [LJYW]
1010199
1010115
-
Tyr
GTA
[ENA]
¡û
>W1710893976
LNFH01000084
Alphaproteobacteria
Rhizobiales bacterium Ga0077556 [LNFH]
5143
5227
+
Tyr
GTA
[ENA]
¡û
>W1711228849
LXWX01000077
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
32004
31920
-
Tyr
GTA
[ENA]
¡û
>W131163767
ARAA01000030
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
129206
129290
+
Tyr
GTA
[ENA]
¡û
>W131166810
ARCT01000001
Alphaproteobacteria
Methylocystis rosea SV97 [ARCT]
1294518
1294434
-
Tyr
GTA
[ENA]
¡û
>C171101473
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
2526949
2527033
+
Tyr
GTA
-
¡û
>w026469
ABAY01000044
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
1171
1257
+
Tyr
GTA
[ENA]
¡û
>WENV180022783
FTGS01001269
[FTGS] metagenome; soil
716
632
-
Tyr
GTA
[ENA]
¢þ
>WENV180032109
FTJU01130319
[FTJU] metagenome; soil
459
375
-
Tyr
GTA
[ENA]
¢þ
>WENV180095550
MTBK01073737
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
701
785
+
Tyr
GTA
[ENA]
¢þ
>WENV180249984
OBEQ010245081
[OBEQ] groundwater metagenome; groundwater
901
817
-
Tyr
GTA
[ENA]
¢þ
>WENV180309233
OBJR01721368
[OBJR] soil metagenome; soil
38
122
+
Tyr
GTA
[ENA]
¢þ
>WENV180351511
OBLQ010065014
[OBLQ] soil metagenome; soil
259
175
-
Tyr
GTA
[ENA]
¢þ
>WENV180691215
OCZS010078446
[OCZS] soil metagenome; soil
429
345
-
Tyr
GTA
[ENA]
¢þ
>WENV180693057
OCZS010971219
[OCZS] soil metagenome; soil
152
68
-
Tyr
GTA
[ENA]
¢þ
>WENV181155537
OEID01227126
[OEID] soil metagenome; soil
22
106
+
Tyr
GTA
[ENA]
¢þ
>WENV181166539
OEIU01000553
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
6804
6888
+
Tyr
GTA
[ENA]
¢þ
>WENV181166687
OEIU01001150
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
4968
5052
+
Tyr
GTA
[ENA]
¢þ
>WENV181171997
OEIV010442323
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
154
70
-
Tyr
GTA
[ENA]
¢þ
>WENV181308087
OFIS01000200
[OFIS] sludge metagenome; sludge
57658
57742
+
Tyr
GTA
[ENA]
¢þ
>WENV181311648
OFJB01006730
[OFJB] sludge metagenome; sludge
532
448
-
Tyr
GTA
[ENA]
¢þ
>WENV181401559
OFTX01000926
[OFTX] sludge metagenome; sludge
532
448
-
Tyr
GTA
[ENA]
¢þ
>W141188891
AYNA01000040
Alphaproteobacteria
Methylocystis sp. SB2 [AYNA]
50655
50571
-
Tyr
GTA
[ENA]
¡û
>W141216013
AZUO01000001
Alphaproteobacteria
Methylosinus sp. LW3 [AZUO]
608155
608239
+
Tyr
GTA
[ENA]
¡û
>C08006462
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
3475032
3474951
-
Tyr
GTA
[Ensembl]
¡û
>WENV183662306
ORJL010179121
[ORJL] groundwater metagenome; groundwater
41
125
+
Tyr
GTA
[ENA]
¢þ
>WENV183663640
ORJL010302949
[ORJL] groundwater metagenome; groundwater
1786
1702
-
Tyr
GTA
[ENA]
¢þ
>WENV183687192
ORMF011110490
[ORMF] groundwater metagenome; groundwater
492
576
+
Tyr
GTA
[ENA]
¢þ
>WENV170553557
CXWK01022854
[CXWK] wastewater metagenome; activated sludge
1274
1358
+
Tyr
GTA
[ENA]
¢þ
>WENV170712545
LNFM01014699
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4691
4607
-
Tyr
GTA
[ENA]
¢þ
>WENV170973327
MTKY01028058
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1904
1820
-
Tyr
GTA
[ENA]
¢þ
>C181180217
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
5320552
5320468
-
Tyr
GTA
-
¡û
>C181180218
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
5320304
5320220
-
Tyr
GTA
-
¡û
>C191118922
CP034086
Alphaproteobacteria
Methylocystis rosea GW6 [CP034086]
213458
213374
-
Tyr
GTA
-
¡û
>C191170860
CP039690
Alphaproteobacteria
Phreatobacter stygius KCTC 52518 [CP039690]
6387142
6387226
+
Tyr
GTA
-
¡û
>W141810181
JPUG01000041
Alphaproteobacteria
Microvirga sp. BSC39 aerilata [JPUG]
10781
10865
+
Tyr
GTA
[ENA]
¡û
>C09107879
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
229021
228937
-
Tyr
GTA
[Ensembl]
¡û
>W1911747240
QWDD01000001
Alphaproteobacteria
Methylocystis hirsuta CSC1 [QWDD]
3555661
3555745
+
Tyr
GTA
[ENA]
¡û
>W1810330563
PUIV01000011
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
40342
40258
-
Tyr
GTA
[ENA]
¡û
>W1810368599
PVZS01000014
Alphaproteobacteria
Alsobacter soli SH9 [PVZS]
136765
136681
-
Tyr
GTA
[ENA]
¡û
>W1810397200
PYDU01000008
Alphaproteobacteria
Methylocystis sp. MitZ-2018 [PYDU]
103134
103218
+
Tyr
GTA
[ENA]
¡û
>W1810706699
QMKH01000009
Alphaproteobacteria
Microvirga flavescens c27j1 [QMKH]
1116
1032
-
Tyr
GTA
[ENA]
¡û
>W10118839
ADVE01000051
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
31807
31723
-
Tyr
GTA
[ENA]
¡û
>W1511400880
JTHF01000046
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
3424
3340
-
Tyr
GTA
[ENA]
¡û
>W1511400881
JTHF01000046
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
3190
3106
-
Tyr
GTA
[ENA]
¡û
>W1511400928
JTHG01000037
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
59594
59678
+
Tyr
GTA
[ENA]
¡û
>W1511400929
JTHG01000037
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
59828
59912
+
Tyr
GTA
[ENA]
¡û
>W11125011
ADVE01000051
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
31807
31723
-
Tyr
GTA
[ENA]
¡û
>W1511624253
LCYG01000018
Alphaproteobacteria
Microvirga vignae BR3299 [LCYG]
57218
57302
+
Tyr
GTA
[ENA]
¡û
>W11150259
AEVM01000051
Alphaproteobacteria
Methylocystis sp. ATCC 49242 [AEVM]
2493
2409
-
Tyr
GTA
[ENA]
¡û
>C161001149
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
3863135
3863219
+
Tyr
GTA
[Ensembl]
¡û
>C161001150
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
3863369
3863453
+
Tyr
GTA
[Ensembl]
¡û
>W121067993
AJTV01000021
Alphaproteobacteria
Methylocystis parvus OBBP [AJTV]
13105
13021
-
Tyr
GTA
[ENA]
¡û
>C131019914
HE956757
Alphaproteobacteria
Methylocystis sp. SC2 [HE956757]
1651983
1652067
+
Tyr
GTA
[Ensembl]
¡û
>W1610590410
LDRL01000008
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
28124
28208
+
Tyr
GTA
[ENA]
¡û
>W1610590411
LDRL01000008
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
28358
28442
+
Tyr
GTA
[ENA]
¡û
>W1610667801
LJYW01000001
Alphaproteobacteria
Prosthecomicrobium hirschii [LJYW]
1010199
1010115
-
Tyr
GTA
[ENA]
¡û
>W1610754242
LNFH01000084
Alphaproteobacteria
Rhizobiales bacterium Ga0077556 [LNFH]
5143
5227
+
Tyr
GTA
[ENA]
¡û
>W1611012766
LXWX01000077
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
32004
31920
-
Tyr
GTA
[ENA]
¡û
>W1710579080
FPCB01000045
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
31167
31251
+
Tyr
GTA
[ENA]
¡û
>W1710579081
FPCB01000045
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
31615
31699
+
Tyr
GTA
[ENA]
¡û
>W1710709690
LDRL01000008
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
28124
28208
+
Tyr
GTA
[ENA]
¡û
>W1710709691
LDRL01000008
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
28358
28442
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK