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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.119495 (63 seq.)
>W1710853369
LLWP01000002
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
150242
150322
+
Leu
CAA
[ENA]
¡û
>W1710871267
LMLE01000006
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
203350
203430
+
Leu
CAA
[ENA]
¡û
>W1710888314
LMZQ01000006
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
77526
77444
-
Leu
CAA
[ENA]
¡û
>W1711354772
MDFN01000005
Bacteroidota
Arcticibacter eurypsychrophilus [MDFN]
139811
139893
+
Leu
CAA
[ENA]
¡û
>W1711360573
MDJS01000002
Bacteroidota
Mucilaginibacter sp. PPCGB 2223 [MDJS]
837780
837700
-
Leu
CAA
[ENA]
¡û
>W1711629958
MPPL01000001
Bacteroidota
Mucilaginibacter polytrichastri [MPPL]
1789126
1789046
-
Leu
CAA
[ENA]
¡û
>C171057638
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
3586495
3586577
+
Leu
CAA
-
¡û
>C171117323
CP021237
Bacteroidota
Sphingobacteriaceae bacterium GW460-11-11-14-LB5 [CP021237]
895431
895513
+
Leu
CAA
-
¡û
>W131145896
AQGK01000001
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
2401191
2401111
-
Leu
CAA
[ENA]
¡û
>W131156258
AQPN01000022
Bacteroidota
Arcticibacter svalbardensis MN12-7 [AQPN]
8426
8346
-
Leu
CAA
[ENA]
¡û
>W141142850
AWRU01000006
Bacteroidota
Pedobacter sp. V48 [AWRU]
285056
285136
+
Leu
CAA
[ENA]
¡û
>W141292017
JAUG01000021
Bacteroidota
Pedobacter borealis DSM 19626 [JAUG]
41063
40981
-
Leu
CAA
[ENA]
¡û
>WENV183742459
PJUI01000001
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
900745
900825
+
Leu
CAA
[ENA]
¢þ
>WENV183743694
PJUJ01024195
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
248
328
+
Leu
CAA
[ENA]
¢þ
>WENV170995516
MWWF01017210
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
200
282
+
Leu
CAA
[ENA]
¢þ
>WENV170997054
MWWG01024006
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
521
439
-
Leu
CAA
[ENA]
¢þ
>C181094378
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
2983847
2983767
-
Leu
CAA
-
¡û
>C191226433
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
2783393
2783473
+
Leu
CAA
-
¡û
>W09109606
ABUJ01000029
Bacteroidota
Pedobacter heparinus DSM 2366 [ABUJ]
26858
26938
+
Leu
CAA
[ENA]
¡û
>C09108562
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
3772640
3772560
-
Leu
CAA
[Ensembl]
¡û
>W1911496563
OCMT01000002
Bacteroidota
Pedobacter xixiisoli CGMCC 1.12803 [OCMT]
179397
179315
-
Leu
CAA
[ENA]
¡û
>W1911647378
QAJL01000001
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
1935188
1935108
-
Leu
CAA
[ENA]
¡û
>W1911647671
QAJQ01000034
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
100329
100409
+
Leu
CAA
[ENA]
¡û
>W1911747174
QWDC01000001
Bacteroidota
Mucilaginibacter conchicola MYSH2 [QWDC]
537514
537594
+
Leu
CAA
[ENA]
¡û
>W1810364519
PVTH01000004
Bacteroidota
Arcticibacter pallidicorallinus CGMCC 1.9313 [PVTH]
213973
213893
-
Leu
CAA
[ENA]
¡û
>W1810474643
QAIL01000176
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
5598
5518
-
Leu
CAA
[ENA]
¡û
>W1810503881
QBKL01000016
Bacteroidota
Pedobacter sp. OK291 [QBKL]
386079
385999
-
Leu
CAA
[ENA]
¡û
>W1810503890
QBKM01000001
Bacteroidota
Pedobacter sp. YR016 [QBKM]
492648
492728
+
Leu
CAA
[ENA]
¡û
>W1810584241
QEYR01000050
Bacteroidota
Mucilaginibacter rubeus P1 [QEYR]
259172
259092
-
Leu
CAA
[ENA]
¡û
>W1810587288
QFKV01000017
Bacteroidota
Mucilaginibacter rubeus P3 [QFKV]
258
178
-
Leu
CAA
[ENA]
¡û
>W1810587330
QFKW01000014
Bacteroidota
Mucilaginibacter rubeus P2 [QFKW]
259172
259092
-
Leu
CAA
[ENA]
¡û
>W1810606107
QGNY01000004
Bacteroidota
Pedobacter paludis R-8 [QGNY]
90364
90444
+
Leu
CAA
[ENA]
¡û
>W1810676143
QKLU01000004
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
16955
16875
-
Leu
CAA
[ENA]
¡û
>W1810676184
QKLV01000003
Bacteroidota
Mucilaginibacter sp. OV119 [QKLV]
286178
286098
-
Leu
CAA
[ENA]
¡û
>W1810693885
QLLR01000008
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
130539
130621
+
Leu
CAA
[ENA]
¡û
>W1810704354
QMHQ01000003
Bacteroidota
Pedobacter namyangjuensis 5G38 [QMHQ]
365863
365943
+
Leu
CAA
[ENA]
¡û
>W1810885601
QUNL01000005
Bacteroidota
Pedobacter sp. OV280 [QUNL]
244
164
-
Leu
CAA
[ENA]
¡û
>W11138385
AEIH01000066
Bacteroidota
Mucilaginibacter paludis DSM 18603 [AEIH]
192461
192381
-
Leu
CAA
[ENA]
¡û
>W1511509400
JXRA01000006
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
156504
156424
-
Leu
CAA
[ENA]
¡û
>C161072996
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
150190
150272
+
Leu
CAA
[Ensembl]
¡û
>C161077173
CP014773
Bacteroidota
Mucilaginibacter sp. PAMC 26640 [CP014773]
3838125
3838045
-
Leu
CAA
[Ensembl]
¡û
>W1610612070
LGEK01000010
Bacteroidota
Mucilaginibacter sp. L294 [LGEK]
36399
36317
-
Leu
CAA
[ENA]
¡û
>W1610612106
LGEL01000005
Bacteroidota
Pedobacter panaciterrae [LGEL]
71210
71290
+
Leu
CAA
[ENA]
¡û
>W1610716493
LLWP01000002
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
150242
150322
+
Leu
CAA
[ENA]
¡û
>W1610733613
LMLE01000006
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
203350
203430
+
Leu
CAA
[ENA]
¡û
>W1610748692
LMZQ01000006
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
77526
77444
-
Leu
CAA
[ENA]
¡û
>W1710505627
FMTV01000001
Bacteroidota
Mucilaginibacter sp. NFR10 [FMTV]
923158
923240
+
Leu
CAA
[ENA]
¡û
>W1710512294
FMZH01000006
Bacteroidota
Pedobacter soli [FMZH]
304065
303985
-
Leu
CAA
[ENA]
¡û
>W1710513646
FNAI01000001
Bacteroidota
Mucilaginibacter pineti [FNAI]
690107
690187
+
Leu
CAA
[ENA]
¡û
>W1710516004
FNCG01000006
Bacteroidota
Mucilaginibacter gossypii [FNCG]
27530
27448
-
Leu
CAA
[ENA]
¡û
>W1710516051
FNCH01000007
Bacteroidota
Pedobacter terrae [FNCH]
90214
90296
+
Leu
CAA
[ENA]
¡û
>W1710519673
FNEX01000008
Bacteroidota
Pedobacter sp. ok626 [FNEX]
687
607
-
Leu
CAA
[ENA]
¡û
>W1710522094
FNGY01000006
Bacteroidota
Pedobacter steynii [FNGY]
318466
318548
+
Leu
CAA
[ENA]
¡û
>W1710525869
FNJV01000005
Bacteroidota
Mucilaginibacter sp. OK268 [FNJV]
188544
188462
-
Leu
CAA
[ENA]
¡û
>W1710548321
FODR01000006
Bacteroidota
Mucilaginibacter sp. OK283 [FODR]
320706
320624
-
Leu
CAA
[ENA]
¡û
>W1710563366
FOPP01000014
Bacteroidota
Pedobacter insulae [FOPP]
78409
78327
-
Leu
CAA
[ENA]
¡û
>W1710577046
FPAM01000013
Bacteroidota
Mucilaginibacter polytrichastri [FPAM]
11589
11509
-
Leu
CAA
[ENA]
¡û
>W1710583231
FQUQ01000002
Bacteroidota
Pedobacter caeni [FQUQ]
578065
578147
+
Leu
CAA
[ENA]
¡û
>W1710595922
FTMG01000001
Bacteroidota
Mucilaginibacter lappiensis [FTMG]
52657
52737
+
Leu
CAA
[ENA]
¡û
>W1710606343
FWXT01000001
Bacteroidota
Pedobacter africanus [FWXT]
921631
921713
+
Leu
CAA
[ENA]
¡û
>W1710606793
FWYB01000007
Bacteroidota
Pedobacter nyackensis [FWYB]
6543
6463
-
Leu
CAA
[ENA]
¡û
>W1710733576
LGEK01000010
Bacteroidota
Mucilaginibacter sp. L294 [LGEK]
36399
36317
-
Leu
CAA
[ENA]
¡û
>W1710733612
LGEL01000005
Bacteroidota
Pedobacter panaciterrae [LGEL]
71210
71290
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK