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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.119587 (7 seq.)
>W131229773
AUHA01000004
Bacteroidota
Daejeonella oryzae DSM 19973 [AUHA]
284660
284740
+
Leu
CAA
[ENA]
¡û
>W141027921
AKZJ01000003
Bacteroidota
Pedobacter arcticus A12 [AKZJ]
465345
465427
+
Leu
CAA
[ENA]
¡û
>WENV170990696
MWWA01031091
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
853
771
-
Leu
CAA
[ENA]
¢þ
>WENV170991874
MWWA01358700
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
14
94
+
Leu
CAA
[ENA]
¢þ
>WENV170993610
MWWB01371690
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
390
306
-
Leu
CAA
[ENA]
¢þ
>W1710522563
FNHH01000002
Bacteroidota
Daejeonella rubra ruber [FNHH]
204066
204148
+
Leu
CAA
[ENA]
¡û
>W1710602994
FUYR01000005
Bacteroidota
Daejeonella lutea luteus [FUYR]
13840
13758
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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