This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.119929 (47 seq.)
>W1711009583
LQQU01000017
Betaproteobacteria
Crenobacter luteus [LQQU]
2713
2799
+
Leu
CAG
[ENA]
¡û
>W1711009584
LQQU01000017
Betaproteobacteria
Crenobacter luteus [LQQU]
2873
2959
+
Leu
CAG
[ENA]
¡û
>W1711009585
LQQU01000017
Betaproteobacteria
Crenobacter luteus [LQQU]
3023
3109
+
Leu
CAG
[ENA]
¡û
>W1711484369
MKCR01000001
Betaproteobacteria
Chromobacterium amazonense [MKCR]
6794
6880
+
Leu
CAG
[ENA]
¡û
>C171094943
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
2218490
2218404
-
Leu
CAG
-
¡û
>C171094944
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
2218341
2218255
-
Leu
CAG
-
¡û
>W131161567
AQXU01000023
Betaproteobacteria
Leeia oryzae DSM 17879 [AQXU]
70644
70730
+
Leu
CAG
[ENA]
¡û
>W131161568
AQXU01000023
Betaproteobacteria
Leeia oryzae DSM 17879 [AQXU]
70788
70874
+
Leu
CAG
[ENA]
¡û
>W131229710
AUGZ01000011
Betaproteobacteria
Paludibacterium yongneupense DSM 18731 [AUGZ]
2340
2426
+
Leu
CAG
[ENA]
¡û
>W131229711
AUGZ01000011
Betaproteobacteria
Paludibacterium yongneupense DSM 18731 [AUGZ]
2472
2558
+
Leu
CAG
[ENA]
¡û
>W131229712
AUGZ01000011
Betaproteobacteria
Paludibacterium yongneupense DSM 18731 [AUGZ]
8064
8150
+
Leu
CAG
[ENA]
¡û
>W141216183
AZUR01000001
Betaproteobacteria
Pseudogulbenkiania sp. MAI-1 [AZUR]
3213173
3213259
+
Leu
CAG
[ENA]
¡û
>W141216184
AZUR01000001
Betaproteobacteria
Pseudogulbenkiania sp. MAI-1 [AZUR]
3213320
3213406
+
Leu
CAG
[ENA]
¡û
>WENV170662292
JXWW01029478
[JXWW] soil metagenome; rice field; organic GM Plot
221
307
+
Leu
CAG
[ENA]
¢þ
>WENV170961382
MLJW01000021
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
210126
210212
+
Leu
CAG
[ENA]
¢þ
>W141557785
JHVK01000020
Betaproteobacteria
Microvirgula aerodenitrificans DSM 15089 [JHVK]
28658
28572
-
Leu
CAG
[ENA]
¡û
>W141557786
JHVK01000020
Betaproteobacteria
Microvirgula aerodenitrificans DSM 15089 [JHVK]
28509
28423
-
Leu
CAG
[ENA]
¡û
>W09125813
ACIS01000008
Betaproteobacteria
Pseudogulbenkiania ferrooxidans 2002 [ACIS]
284524
284438
-
Leu
CAG
[ENA]
¡û
>W09125814
ACIS01000008
Betaproteobacteria
Pseudogulbenkiania ferrooxidans 2002 [ACIS]
284384
284298
-
Leu
CAG
[ENA]
¡û
>W09125815
ACIS01000008
Betaproteobacteria
Pseudogulbenkiania ferrooxidans 2002 [ACIS]
284237
284151
-
Leu
CAG
[ENA]
¡û
>W1810240341
PPTF01000068
Betaproteobacteria
Chromobacterium sinusclupearum MWU13-2610 [PPTF]
3484
3570
+
Leu
CAG
[ENA]
¡û
>W1810659743
QJKI01000007
Betaproteobacteria
Rivihabitans pingtungensis DSM 29661 [QJKI]
42068
42154
+
Leu
CAG
[ENA]
¡û
>W1810659744
QJKI01000007
Betaproteobacteria
Rivihabitans pingtungensis DSM 29661 [QJKI]
42217
42303
+
Leu
CAG
[ENA]
¡û
>W1810696530
QLTJ01000018
Betaproteobacteria
Microvirgula sp. AG722 [QLTJ]
34133
34219
+
Leu
CAG
[ENA]
¡û
>W1810696531
QLTJ01000018
Betaproteobacteria
Microvirgula sp. AG722 [QLTJ]
34282
34368
+
Leu
CAG
[ENA]
¡û
>W10111487
ADDK01000007
Betaproteobacteria
Azospira oryzae PS [ADDK]
282644
282558
-
Leu
CAG
[ENA]
¡û
>W10111488
ADDK01000007
Betaproteobacteria
Azospira oryzae PS [ADDK]
282504
282418
-
Leu
CAG
[ENA]
¡û
>W10111489
ADDK01000007
Betaproteobacteria
Azospira oryzae PS [ADDK]
282357
282271
-
Leu
CAG
[ENA]
¡û
>W1510740995
CYHA01000001
Betaproteobacteria
Gulbenkiania indica DSM 17901 [CYHA]
2840
2926
+
Leu
CAG
[ENA]
¡û
>W1510740996
CYHA01000001
Betaproteobacteria
Gulbenkiania indica DSM 17901 [CYHA]
3102
3188
+
Leu
CAG
[ENA]
¡û
>W1511400021
JTGE01000121
Betaproteobacteria
Chromobacterium piscinae ND17 [JTGE]
13553
13467
-
Leu
CAG
[ENA]
¡û
>C121000539
AP012224
Betaproteobacteria
Pseudogulbenkiania sp. NH8B [AP012224]
3299877
3299963
+
Leu
CAG
[Ensembl]
¡û
>C121000540
AP012224
Betaproteobacteria
Pseudogulbenkiania sp. NH8B [AP012224]
3300017
3300103
+
Leu
CAG
[Ensembl]
¡û
>C121000541
AP012224
Betaproteobacteria
Pseudogulbenkiania sp. NH8B [AP012224]
3300164
3300250
+
Leu
CAG
[Ensembl]
¡û
>W1610631848
LION01000001
Betaproteobacteria
Gulbenkiania indica [LION]
2840
2926
+
Leu
CAG
[ENA]
¡û
>W1610631849
LION01000001
Betaproteobacteria
Gulbenkiania indica [LION]
3102
3188
+
Leu
CAG
[ENA]
¡û
>W1610637965
LIVN01000001
Betaproteobacteria
Gulbenkiania mobilis [LIVN]
360005
359919
-
Leu
CAG
[ENA]
¡û
>W1610638016
LIVN01000070
Betaproteobacteria
Gulbenkiania mobilis [LIVN]
2645
2731
+
Leu
CAG
[ENA]
¡û
>W1610858103
LQQU01000017
Betaproteobacteria
Crenobacter luteus [LQQU]
2713
2799
+
Leu
CAG
[ENA]
¡û
>W1610858104
LQQU01000017
Betaproteobacteria
Crenobacter luteus [LQQU]
2873
2959
+
Leu
CAG
[ENA]
¡û
>W1610858105
LQQU01000017
Betaproteobacteria
Crenobacter luteus [LQQU]
3023
3109
+
Leu
CAG
[ENA]
¡û
>W1710607706
FXAG01000013
Betaproteobacteria
Pseudogulbenkiania subflava DSM 22618 [FXAG]
2748
2834
+
Leu
CAG
[ENA]
¡û
>W1710607707
FXAG01000013
Betaproteobacteria
Pseudogulbenkiania subflava DSM 22618 [FXAG]
2895
2981
+
Leu
CAG
[ENA]
¡û
>W1710764733
LION01000001
Betaproteobacteria
Gulbenkiania indica [LION]
2840
2926
+
Leu
CAG
[ENA]
¡û
>W1710764734
LION01000001
Betaproteobacteria
Gulbenkiania indica [LION]
3102
3188
+
Leu
CAG
[ENA]
¡û
>W1710772738
LIVN01000001
Betaproteobacteria
Gulbenkiania mobilis [LIVN]
360005
359919
-
Leu
CAG
[ENA]
¡û
>W1710772789
LIVN01000070
Betaproteobacteria
Gulbenkiania mobilis [LIVN]
2645
2731
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK