This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.120213 (101 seq.)
>W131195620
ASSS01000012
Bacillota
Eubacterium sp. 14-2 [ASSS]
9780
9697
-
Tyr
GTA
[ENA]
¡û
>W131195653
ASST01000018
Bacillota
Lachnospiraceae bacterium 3-1 [ASST]
336634
336717
+
Tyr
GTA
[ENA]
¡û
>W131195662
ASST01000018
Bacillota
Lachnospiraceae bacterium 3-1 [ASST]
358490
358573
+
Tyr
GTA
[ENA]
¡û
>W131195847
ASSX01000005
Bacillota
Lachnospiraceae bacterium A2 [ASSX]
228407
228490
+
Tyr
GTA
[ENA]
¡û
>W131196209
ASTD01000056
Bacillota
Dorea sp. 5-2 [ASTD]
690
773
+
Tyr
GTA
[ENA]
¡û
>W131238838
BAIF02000008
Bacillota
Clostridiales bacterium VE202-21 [BAIF]
230
312
+
Tyr
GTA
[ENA]
¡û
>C171064253
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2590769
2590853
+
Tyr
GTA
-
¡û
>C171064280
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2618848
2618932
+
Tyr
GTA
-
¡û
>C171064316
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
715610
715526
-
Tyr
GTA
-
¡û
>C171064350
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
695369
695285
-
Tyr
GTA
-
¡û
>C171064362
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
688643
688559
-
Tyr
GTA
-
¡û
>C171109200
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1396595
1396679
+
Tyr
GTA
-
¡û
>C171109227
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1424673
1424757
+
Tyr
GTA
-
¡û
>C171109258
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4108162
4108078
-
Tyr
GTA
-
¡û
>C171109292
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4087921
4087837
-
Tyr
GTA
-
¡û
>C171109304
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4081195
4081111
-
Tyr
GTA
-
¡û
>WENV180409056
OBUT01010084
[OBUT] human gut metagenome; faeces
127
44
-
Tyr
GTA
[ENA]
¢þ
>WENV180458031
OBXV01000342
[OBXV] human gut metagenome; faeces
27307
27390
+
Tyr
GTA
[ENA]
¢þ
>WENV180458084
OBXV01000521
[OBXV] human gut metagenome; faeces
17671
17588
-
Tyr
GTA
[ENA]
¢þ
>WENV180492134
OBZW01000385
[OBZW] human gut metagenome; faeces
68
150
+
Tyr
GTA
[ENA]
¢þ
>WENV181117947
OEFH01002812
[OEFH] human metagenome; G_DNA_Stool
3844
3762
-
Tyr
GTA
[ENA]
¢þ
>WENV181148608
OEHT01005593
[OEHT] human metagenome; G_DNA_Stool
2915
2997
+
Tyr
GTA
[ENA]
¢þ
>WENV181149469
OEHT01087928
[OEHT] human metagenome; G_DNA_Stool
347
264
-
Tyr
GTA
[ENA]
¢þ
>WENV181235464
OFEY01000468
[OFEY] mouse gut metagenome; faeces
21025
20943
-
Tyr
GTA
[ENA]
¢þ
>WENV181236339
OFEZ01000332
[OFEZ] mouse gut metagenome; faeces
22649
22567
-
Tyr
GTA
[ENA]
¢þ
>WENV181238183
OFFB01028981
[OFFB] mouse gut metagenome; faeces
467
549
+
Tyr
GTA
[ENA]
¢þ
>WENV181239314
OFFD01000446
[OFFD] mouse gut metagenome; faeces
22649
22567
-
Tyr
GTA
[ENA]
¢þ
>WENV181240227
OFFE01000444
[OFFE] mouse gut metagenome; faeces
22576
22494
-
Tyr
GTA
[ENA]
¢þ
>WENV181242482
OFFG01000443
[OFFG] mouse gut metagenome; faeces
13046
13128
+
Tyr
GTA
[ENA]
¢þ
>WENV181243598
OFFH01000260
[OFFH] mouse gut metagenome; faeces
31936
31854
-
Tyr
GTA
[ENA]
¢þ
>WENV181244672
OFFI01000542
[OFFI] mouse gut metagenome; faeces
12400
12318
-
Tyr
GTA
[ENA]
¢þ
>WENV181245716
OFFJ01001330
[OFFJ] mouse gut metagenome; faeces
5255
5173
-
Tyr
GTA
[ENA]
¢þ
>WENV181246710
OFFK01000468
[OFFK] mouse gut metagenome; faeces
22576
22494
-
Tyr
GTA
[ENA]
¢þ
>WENV181251185
OFFO01001318
[OFFO] mouse gut metagenome; faeces
11123
11041
-
Tyr
GTA
[ENA]
¢þ
>WENV181253131
OFFQ01001200
[OFFQ] mouse gut metagenome; faeces
3256
3174
-
Tyr
GTA
[ENA]
¢þ
>WENV181254180
OFFR01001036
[OFFR] mouse gut metagenome; faeces
180
97
-
Tyr
GTA
[ENA]
¢þ
>WENV181255283
OFFS01001098
[OFFS] mouse gut metagenome; faeces
12937
13020
+
Tyr
GTA
[ENA]
¢þ
>WENV181256176
OFFT01000645
[OFFT] mouse gut metagenome; faeces
24053
23971
-
Tyr
GTA
[ENA]
¢þ
>WENV181257340
OFFU01000657
[OFFU] mouse gut metagenome; faeces
13986
14068
+
Tyr
GTA
[ENA]
¢þ
>WENV181258652
OFFV01001393
[OFFV] mouse gut metagenome; faeces
1531
1448
-
Tyr
GTA
[ENA]
¢þ
>WENV181259530
OFFW01000322
[OFFW] mouse gut metagenome; faeces
13046
13128
+
Tyr
GTA
[ENA]
¢þ
>WENV181260648
OFFX01000432
[OFFX] mouse gut metagenome; faeces
22568
22486
-
Tyr
GTA
[ENA]
¢þ
>WENV181261877
OFFY01000516
[OFFY] mouse gut metagenome; faeces
14724
14806
+
Tyr
GTA
[ENA]
¢þ
>WENV181263151
OFFZ01000255
[OFFZ] mouse gut metagenome; faeces
22140
22058
-
Tyr
GTA
[ENA]
¢þ
>WENV181265582
OFGB01000309
[OFGB] mouse gut metagenome; faeces
22575
22493
-
Tyr
GTA
[ENA]
¢þ
>WENV181267092
OFGC01000887
[OFGC] mouse gut metagenome; faeces
12219
12137
-
Tyr
GTA
[ENA]
¢þ
>WENV181268110
OFGD01000664
[OFGD] mouse gut metagenome; faeces
3327
3245
-
Tyr
GTA
[ENA]
¢þ
>WENV181270643
OFGF01000456
[OFGF] mouse gut metagenome; faeces
22576
22494
-
Tyr
GTA
[ENA]
¢þ
>WENV181271944
OFGG01000882
[OFGG] mouse gut metagenome; faeces
6
88
+
Tyr
GTA
[ENA]
¢þ
>WENV181276084
OFGK01000554
[OFGK] mouse gut metagenome; faeces
19842
19760
-
Tyr
GTA
[ENA]
¢þ
>WENV181277210
OFGL01000771
[OFGL] mouse gut metagenome; faeces
10327
10409
+
Tyr
GTA
[ENA]
¢þ
>WENV181278419
OFGM01001360
[OFGM] mouse gut metagenome; faeces
12874
12956
+
Tyr
GTA
[ENA]
¢þ
>WENV181280951
OFGO01003711
[OFGO] mouse gut metagenome; faeces
1234
1317
+
Tyr
GTA
[ENA]
¢þ
>WENV181281781
OFGP01000586
[OFGP] mouse gut metagenome; faeces
22576
22494
-
Tyr
GTA
[ENA]
¢þ
>WENV181283023
OFGQ01000402
[OFGQ] mouse gut metagenome; faeces
13333
13415
+
Tyr
GTA
[ENA]
¢þ
>WENV181284295
OFGR01000553
[OFGR] mouse gut metagenome; faeces
23979
23897
-
Tyr
GTA
[ENA]
¢þ
>WENV181287031
OFGX01000379
[OFGX] mouse gut metagenome; faeces
13185
13267
+
Tyr
GTA
[ENA]
¢þ
>WENV181288784
OFGZ01001127
[OFGZ] mouse gut metagenome; faeces
2645
2563
-
Tyr
GTA
[ENA]
¢þ
>WENV181289520
OFHA01000238
[OFHA] mouse gut metagenome; faeces
4447
4365
-
Tyr
GTA
[ENA]
¢þ
>WENV181290825
OFHB01000307
[OFHB] mouse gut metagenome; faeces
22576
22494
-
Tyr
GTA
[ENA]
¢þ
>WENV181298809
OFHM01000141
[OFHM] mouse gut metagenome; faeces
54801
54719
-
Tyr
GTA
[ENA]
¢þ
>WENV181300241
OFHN01000493
[OFHN] mouse gut metagenome; faeces
13046
13128
+
Tyr
GTA
[ENA]
¢þ
>WENV181301641
OFHO01000510
[OFHO] mouse gut metagenome; faeces
22567
22485
-
Tyr
GTA
[ENA]
¢þ
>WENV181302895
OFHP01000269
[OFHP] mouse gut metagenome; faeces
13035
13117
+
Tyr
GTA
[ENA]
¢þ
>WENV181342695
OFMI01054766
[OFMI] human gut metagenome; human gut
619
537
-
Tyr
GTA
[ENA]
¢þ
>WENV181441290
OGDN01005311
[OGDN] human gut metagenome; human gut
1570
1652
+
Tyr
GTA
[ENA]
¢þ
>WENV181509580
OGGQ01006958
[OGGQ] metagenome; Human gut stool
83
-1
-
Tyr
GTA
[ENA]
¢þ
>W08003170
ABFY02000046
Bacillota
[Clostridium] scindens ATCC 35704 [ABFY]
1759
1843
+
Tyr
GTA
[ENA]
¡û
>WENV181910814
OGYC01067846
[OGYC] human gut metagenome; faeces
130
48
-
Tyr
GTA
[ENA]
¢þ
>WENV182180979
OHNO01043584
[OHNO] human gut metagenome; feces
490
573
+
Tyr
GTA
[ENA]
¢þ
>WENV182230967
OHRL01065087
[OHRL] human gut metagenome; feces
109
26
-
Tyr
GTA
[ENA]
¢þ
>W141224218
BAHS01000069
Bacillota
[Clostridium] scindens VE202-05 [BAHS]
14342
14258
-
Tyr
GTA
[ENA]
¡û
>WENV182601651
OJJJ01000188
[OJJJ] metagenome; faeces
40098
40015
-
Tyr
GTA
[ENA]
¢þ
>WENV182601684
OJJJ01000237
[OJJJ] metagenome; faeces
26223
26306
+
Tyr
GTA
[ENA]
¢þ
>WENV182715695
OJPI01008932
[OJPI] human gut metagenome; stool sample
147
65
-
Tyr
GTA
[ENA]
¢þ
>WENV182746783
OJQU01032223
[OJQU] human gut metagenome; stool sample
411
494
+
Tyr
GTA
[ENA]
¢þ
>WENV182955524
OKWD01002600
[OKWD] human gut metagenome; human gut
2380
2463
+
Tyr
GTA
[ENA]
¢þ
>WENV183040264
OLGB01086954
[OLGB] human gut metagenome; faeces
387
305
-
Tyr
GTA
[ENA]
¢þ
>WENV183216804
OLQH01009357
[OLQH] human gut metagenome; faeces
2291
2209
-
Tyr
GTA
[ENA]
¢þ
>WENV183224950
OLQN01016628
[OLQN] human gut metagenome; faeces
10
92
+
Tyr
GTA
[ENA]
¢þ
>WENV183244308
OLRD01027917
[OLRD] human gut metagenome; faeces
114
31
-
Tyr
GTA
[ENA]
¢þ
>WENV183256100
OLRK01005712
[OLRK] human gut metagenome; faeces
4812
4895
+
Tyr
GTA
[ENA]
¢þ
>WENV183281068
OLSB01030491
[OLSB] human gut metagenome; faeces
971
889
-
Tyr
GTA
[ENA]
¢þ
>WENV183502145
OMGS01050958
[OMGS] human gut metagenome; human gut
28
110
+
Tyr
GTA
[ENA]
¢þ
>WENV183715412
PDWI01239411
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
455
539
+
Tyr
GTA
[ENA]
¢þ
>WENV183721611
PDWJ01077373
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
453
537
+
Tyr
GTA
[ENA]
¢þ
>WENV183745477
POVV01000031
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
146114
146031
-
Tyr
GTA
[ENA]
¢þ
>WENV170638005
JFBN01392678
[JFBN] chicken gut metagenome; ceca of Broiler chicken
498
581
+
Tyr
GTA
[ENA]
¢þ
>WENV170979476
MTKZ01092203
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
969
1051
+
Tyr
GTA
[ENA]
¢þ
>C191003046
AP018535
Bacillota
Lachnospiraceae bacterium Choco86 [AP018535]
37769
37852
+
Tyr
GTA
-
¡û
>C191148130
CP036170
Bacillota
[Clostridium] scindens ATCC 35704 [CP036170]
1193421
1193503
+
Tyr
GTA
-
¡û
>W141559594
JHWW01000001
Bacillota
Lachnospiraceae bacterium V9D3004 [JHWW]
619
702
+
Tyr
GTA
[ENA]
¡û
>W1810813577
QRZR01000004
Bacillota
Ruminococcus sp. AF14-10 [QRZR]
245
328
+
Tyr
GTA
[ENA]
¡û
>W1810873064
QUEE01000029
Bacillota
Lachnotalea sp. AF33-28 [QUEE]
414
496
+
Tyr
GTA
[ENA]
¡û
>W1810907832
QVIA01000067
Bacillota
Hungatella hathewayi AF19-21 [QVIA]
282
364
+
Tyr
GTA
[ENA]
¡û
>W11105729
ACTR01000017
Bacillota
Lachnospiraceae bacterium 5_1_57FAA [ACTR]
34999
34915
-
Tyr
GTA
[ENA]
¡û
>W1510652001
CVTZ01000008
Bacillota
Eubacterium sp. SB2 [CVTZ]
3204
3286
+
Tyr
GTA
[ENA]
¡û
>W11112255
ADBG01000117
Bacillota
Clostridium sp. D5 [ADBG]
467
549
+
Tyr
GTA
[ENA]
¡û
>W1511578628
LARB01000158
Bacillota
Ruminococcus sp. A254.MGS-254 [LARB]
533
451
-
Tyr
GTA
[ENA]
¡û
>W1511578763
LARB01000208
Bacillota
Ruminococcus sp. A254.MGS-254 [LARB]
655
738
+
Tyr
GTA
[ENA]
¡û
>W1511626977
LDAQ01000122
Bacillota
Faecalicatena fissicatena KCTC 15010 [LDAQ]
14043
13961
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK