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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.120233 (7 seq.)
>WENV180361548
OBNV01072665
[OBNV] marine metagenome; ENVO:00002042
225
141
-
Leu
CAA
[ENA]
¢þ
>WENV180586554
OCOM01127856
[OCOM] marine metagenome; seawater
330
246
-
Leu
CAA
[ENA]
¢þ
>WENV181122493
OEFM01025929
[OEFM] marine metagenome; ENVO:00000569 for seawater
233
149
-
Leu
CAA
[ENA]
¢þ
>WENV170120128
CENJ01187365
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
235
151
-
Leu
CAA
[ENA]
¢þ
>WENV170770059
LXNH01083620
[LXNH] seawater metagenome; marine seawater
1100
1184
+
Leu
CAA
[ENA]
¢þ
>WENV170837292
MDSZ01146456
[MDSZ] marine metagenome; seawater
5014
4930
-
Leu
CAA
[ENA]
¢þ
>WENV170922607
MDTG01034202
[MDTG] marine metagenome; seawater
7857
7773
-
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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