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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.120253 (106 seq.)
>W1710861576
LMDS01000005
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
1015564
1015648
+
Leu
CAG
[ENA]
¡û
>W1710925668
LODL01000007
Betaproteobacteria
Dechloromonas denitrificans [LODL]
151331
151415
+
Leu
CAG
[ENA]
¡û
>W1710925711
LODL01000036
Betaproteobacteria
Dechloromonas denitrificans [LODL]
267
351
+
Leu
CAG
[ENA]
¡û
>W1711394890
MESN01000231
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_60_6 [MESN]
6770
6686
-
Leu
CAG
[ENA]
¡û
>W1711394985
MESP01000203
Betaproteobacteria
Burkholderiales bacterium RIFOXYC2_FULL_59_8 [MESP]
2624
2540
-
Leu
CAG
[ENA]
¡û
>W1711394997
MESQ01000019
Betaproteobacteria
Burkholderiales bacterium RIFOXYD12_FULL_59_19 [MESQ]
29941
29857
-
Leu
CAG
[ENA]
¡û
>W1711395044
MESR01000335
Betaproteobacteria
Burkholderiales bacterium RIFOXYD2_FULL_59_8 [MESR]
1699
1615
-
Leu
CAG
[ENA]
¡û
>W1711581708
MNUL01000108
Betaproteobacteria
Comamonadaceae bacterium CG1_02_60_18 [MNUL]
23493
23577
+
Leu
CAG
[ENA]
¡û
>W1711583950
MNXW01000029
Betaproteobacteria
Comamonadaceae bacterium CG2_30_57_122 [MNXW]
25584
25500
-
Leu
CAG
[ENA]
¡û
>W1711583960
MNXW01000196
Betaproteobacteria
Comamonadaceae bacterium CG2_30_57_122 [MNXW]
208
124
-
Leu
CAG
[ENA]
¡û
>W1711583975
MNXX01000039
Betaproteobacteria
Comamonadaceae bacterium CG2_30_59_20 [MNXX]
3993
3909
-
Leu
CAG
[ENA]
¡û
>W1711584027
MNXY01000163
Betaproteobacteria
Comamonadaceae bacterium CG2_30_60_41 [MNXY]
15445
15529
+
Leu
CAG
[ENA]
¡û
>W1711584031
MNXY01000182
Betaproteobacteria
Comamonadaceae bacterium CG2_30_60_41 [MNXY]
30577
30493
-
Leu
CAG
[ENA]
¡û
>W1711709072
MSYM01000017
Betaproteobacteria
Rhodoferax antarcticus ANT.BR [MSYM]
234347
234431
+
Leu
CAG
[ENA]
¡û
>W1711718056
MTHD01000002
Betaproteobacteria
Azonexus hydrophilus [MTHD]
680189
680273
+
Leu
CAG
[ENA]
¡û
>W1711721693
MTJN01000002
Betaproteobacteria
Rhodoferax fermentans [MTJN]
245989
246073
+
Leu
CAG
[ENA]
¡û
>W1711751407
MUNS01000035
Betaproteobacteria
Polaromonas sp. C04 [MUNS]
67216
67300
+
Leu
CAG
[ENA]
¡û
>C171091729
CP019240
Betaproteobacteria
Rhodoferax antarcticus DSM 24876 [CP019240]
2384133
2384217
+
Leu
CAG
-
¡û
>W131223563
AUCE01000008
Betaproteobacteria
Azonexus hydrophilus DSM 23864 [AUCE]
312319
312403
+
Leu
CAG
[ENA]
¡û
>C007492
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
3211321
3211405
+
Leu
CAG
[Ensembl]
¡û
>C007493
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
3211576
3211660
+
Leu
CAG
[Ensembl]
¡û
>WENV180022081
FTFO01000148
[FTFO] metagenome; soil
4714
4630
-
Leu
CAG
[ENA]
¢þ
>WENV180022288
FTFX01000729
[FTFX] metagenome; soil
3112
3028
-
Leu
CAG
[ENA]
¢þ
>WENV180023049
FTHH01000722
[FTHH] metagenome; soil
4044
3960
-
Leu
CAG
[ENA]
¢þ
>WENV180024963
FTIL01004021
[FTIL] metagenome; soil
1771
1855
+
Leu
CAG
[ENA]
¢þ
>WENV180025133
FTIL01167354
[FTIL] metagenome; soil
272
356
+
Leu
CAG
[ENA]
¢þ
>WENV180110662
OAPN01002886
[OAPN] marine metagenome; 2011
761
677
-
Leu
CAG
[ENA]
¢þ
>WENV180252616
OBEQ010464409
[OBEQ] groundwater metagenome; groundwater
9014
9098
+
Leu
CAG
[ENA]
¢þ
>WENV180263802
OBEQ011508083
[OBEQ] groundwater metagenome; groundwater
333
417
+
Leu
CAG
[ENA]
¢þ
>WENV180283535
OBID01000546
[OBID] metagenome; sludge
14067
13983
-
Leu
CAG
[ENA]
¢þ
>WENV180283962
OBID01007911
[OBID] metagenome; sludge
1936
2020
+
Leu
CAG
[ENA]
¢þ
>WENV180284507
OBID01050495
[OBID] metagenome; sludge
379
463
+
Leu
CAG
[ENA]
¢þ
>WENV180370985
OBOI01000053
[OBOI] sediment metagenome; sediment
18968
19052
+
Leu
CAG
[ENA]
¢þ
>WENV180395774
OBPT01130719
[OBPT] marine metagenome; ENVO:00002010 seawater
147
63
-
Leu
CAG
[ENA]
¢þ
>WENV181166397
OEIU01000217
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
36213
36129
-
Leu
CAG
[ENA]
¢þ
>WENV181166509
OEIU01000462
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
6901
6985
+
Leu
CAG
[ENA]
¢þ
>WENV181190075
OEOF01458853
[OEOF] activated sludge metagenome; Activated Sludge
90
174
+
Leu
CAG
[ENA]
¢þ
>WENV181231101
OFEK01009653
[OFEK] activated sludge metagenome; Anaerobic digester
2643
2727
+
Leu
CAG
[ENA]
¢þ
>WENV181231435
OFEK01027188
[OFEK] activated sludge metagenome; Anaerobic digester
586
502
-
Leu
CAG
[ENA]
¢þ
>WENV181311093
OFJB01000015
[OFJB] sludge metagenome; sludge
13259
13343
+
Leu
CAG
[ENA]
¢þ
>WENV181311122
OFJB01000041
[OFJB] sludge metagenome; sludge
26001
25917
-
Leu
CAG
[ENA]
¢þ
>WENV181367484
OFQB01003239
[OFQB] freshwater metagenome; Freshwater Lake
389
473
+
Leu
CAG
[ENA]
¢þ
>WENV181367659
OFQC01000477
[OFQC] freshwater metagenome; Freshwater Lake
2093
2009
-
Leu
CAG
[ENA]
¢þ
>WENV181368199
OFQK01003150
[OFQK] freshwater metagenome; Freshwater Lake
273
357
+
Leu
CAG
[ENA]
¢þ
>WENV181368265
OFQL01000040
[OFQL] freshwater metagenome; Freshwater Lake
3221
3137
-
Leu
CAG
[ENA]
¢þ
>WENV181368820
OFQN01001030
[OFQN] freshwater metagenome; Freshwater Lake
2386
2302
-
Leu
CAG
[ENA]
¢þ
>WENV181369391
OFQP01001194
[OFQP] freshwater metagenome; Freshwater Lake
698
614
-
Leu
CAG
[ENA]
¢þ
>WENV181369831
OFQR01000509
[OFQR] freshwater metagenome; Freshwater Lake
2382
2298
-
Leu
CAG
[ENA]
¢þ
>WENV181370180
OFQS01000317
[OFQS] freshwater metagenome; Freshwater Lake
5297
5213
-
Leu
CAG
[ENA]
¢þ
>WENV181370694
OFQT01003710
[OFQT] freshwater metagenome; Freshwater Lake
959
875
-
Leu
CAG
[ENA]
¢þ
>WENV181376054
OFQZ01014110
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
1422
1506
+
Leu
CAG
[ENA]
¢þ
>WENV181377178
OFRA01003517
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1279
1195
-
Leu
CAG
[ENA]
¢þ
>WENV181378445
OFRB01005696
[OFRB] wastewater metagenome; Exp Tend CN 0WW
993
1077
+
Leu
CAG
[ENA]
¢þ
>WENV181379277
OFRD01000231
[OFRD] wastewater metagenome; Exp Tend CN 100WW
4679
4595
-
Leu
CAG
[ENA]
¢þ
>WENV181380856
OFRE01010480
[OFRE] wastewater metagenome; Exp Tend NO 50WW
1260
1344
+
Leu
CAG
[ENA]
¢þ
>WENV181384565
OFRI01002747
[OFRI] wastewater metagenome; Exp Tend VB 90WW
348
432
+
Leu
CAG
[ENA]
¢þ
>WENV181387128
OFRL01045591
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
492
408
-
Leu
CAG
[ENA]
¢þ
>WENV181390287
OFRO01035561
[OFRO] wastewater metagenome; Exp Tend NO 10WW
454
538
+
Leu
CAG
[ENA]
¢þ
>WENV181391255
OFRS01000271
[OFRS] freshwater metagenome; Freshwater Lake
1102
1186
+
Leu
CAG
[ENA]
¢þ
>WENV181391811
OFRU01001912
[OFRU] freshwater metagenome; Freshwater Lake
512
596
+
Leu
CAG
[ENA]
¢þ
>WENV181395628
OFSB01000074
[OFSB] freshwater metagenome; Freshwater Lake
8908
8824
-
Leu
CAG
[ENA]
¢þ
>WENV181400171
OFSF01002005
[OFSF] wastewater metagenome; Exp Tend VB 100WW
2762
2846
+
Leu
CAG
[ENA]
¢þ
>WENV181414778
OGCL01001349
[OGCL] hot springs metagenome; Hot spring water
14750
14666
-
Leu
CAG
[ENA]
¢þ
>W141277633
JAET01000001
Betaproteobacteria
Dechloromonas agitata is5 [JAET]
2148614
2148530
-
Leu
CAG
[ENA]
¡û
>W141277634
JAET01000001
Betaproteobacteria
Dechloromonas agitata is5 [JAET]
2148358
2148274
-
Leu
CAG
[ENA]
¡û
>WENV183703500
PDVJ01018522
[PDVJ] alkali sediment metagenome; glacial lake sediment
1134
1218
+
Leu
CAG
[ENA]
¢þ
>WENV183703869
PDVJ01058071
[PDVJ] alkali sediment metagenome; glacial lake sediment
352
268
-
Leu
CAG
[ENA]
¢þ
>WENV183724878
PJQE01089093
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
454
370
-
Leu
CAG
[ENA]
¢þ
>WENV170009713
APMI01002092
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1483
1399
-
Leu
CAG
[ENA]
¢þ
>WENV170011469
APMI01067630
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1129
1213
+
Leu
CAG
[ENA]
¢þ
>WENV170012135
APMI01124599
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
19
103
+
Leu
CAG
[ENA]
¢þ
>WENV002040
AACY020057383
Marine microbial communities from Global Ocean Sampling (GOS)
1439
1523
+
Leu
CAG
[ENA]
>WENV170551333
CXWJ01004608
[CXWJ] wastewater metagenome; activated sludge
950
1034
+
Leu
CAG
[ENA]
¢þ
>WENV170551378
CXWJ01006000
[CXWJ] wastewater metagenome; activated sludge
355
439
+
Leu
CAG
[ENA]
¢þ
>WENV170551831
CXWJ01024897
[CXWJ] wastewater metagenome; activated sludge
4373
4457
+
Leu
CAG
[ENA]
¢þ
>WENV170557143
CXWL01020059
[CXWL] groundwater metagenome; biofilm material
1143
1059
-
Leu
CAG
[ENA]
¢þ
>WENV170557716
CXWL01034981
[CXWL] groundwater metagenome; biofilm material
2411
2327
-
Leu
CAG
[ENA]
¢þ
>WENV170558991
CXWL01104496
[CXWL] groundwater metagenome; biofilm material
2252
2168
-
Leu
CAG
[ENA]
¢þ
>WENV170634605
FZPR01000568
[FZPR] metagenome; sediment
99
15
-
Leu
CAG
[ENA]
¢þ
>WENV170639462
JFJP01003027
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4254
4338
+
Leu
CAG
[ENA]
¢þ
>WENV170639595
JFJP01005298
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
20031
19947
-
Leu
CAG
[ENA]
¢þ
>WENV170639809
JFJP01008793
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3389
3305
-
Leu
CAG
[ENA]
¢þ
>WENV170653526
JRYJ01004201
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
1739
1823
+
Leu
CAG
[ENA]
¢þ
>WENV170707190
LNAP01014957
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4084
4000
-
Leu
CAG
[ENA]
¢þ
>WENV170707359
LNAP01018606
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2332
2248
-
Leu
CAG
[ENA]
¢þ
>WENV170961940
MLJW01008750
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
418
502
+
Leu
CAG
[ENA]
¢þ
>WENV170975201
MTKY01096742
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1330
1246
-
Leu
CAG
[ENA]
¢þ
>C191081689
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
1123851
1123767
-
Leu
CAG
-
¡û
>W09100889
AADF01000005
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
106529
106613
+
Leu
CAG
[ENA]
¡û
>W09100890
AADF01000005
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
106784
106868
+
Leu
CAG
[ENA]
¡û
>W1910700231
MESI01000022
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 [MESI]
39366
39282
-
Leu
CAG
[ENA]
¡û
>W1910888631
NERY01000003
Betaproteobacteria
Limnohabitans sp. MMS-10A-178 [NERY]
96007
95923
-
Leu
CAG
[ENA]
¡û
>W1910888866
NESE01000002
Betaproteobacteria
Limnohabitans sp. Hippo4 [NESE]
562826
562742
-
Leu
CAG
[ENA]
¡û
>W1911740730
QUSW01000004
Betaproteobacteria
Albitalea terrae S-16 [QUSW]
182653
182737
+
Leu
CAG
[ENA]
¡û
>SRA1004011
SRR002328.95622
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
203
119
-
Leu
CAG
[SRA]
>SRA1004202
SRR002328.195622
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
98
182
+
Leu
CAG
[SRA]
>W1810666622
QJOU01000011
Betaproteobacteria
Piscinibacter caeni MQ-18 [QJOU]
17828
17744
-
Leu
CAG
[ENA]
¡û
>ENV09000850
ABSP01050564
Freshwater sediment metagenome lwMethane_C1
679
763
+
Leu
CAG
[ENA]
¡û
>W1510720058
CXOM01000001
Betaproteobacteria
Limnohabitans sp. Rim11 [CXOM]
504727
504643
-
Leu
CAG
[ENA]
¡û
>W1511705383
LGRD01000024
Betaproteobacteria
Methylibium sp. NZG [LGRD]
135672
135588
-
Leu
CAG
[ENA]
¡û
>C161037574
CP011834
Betaproteobacteria
Limnohabitans sp. 103DPR2 [CP011834]
2137590
2137674
+
Leu
CAG
[Ensembl]
¡û
>WENV057950
AACY023312409
Marine microbial communities from Global Ocean Sampling (GOS)
170
86
-
Leu
CAG
[ENA]
>W1610723922
LMDS01000005
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
1015564
1015648
+
Leu
CAG
[ENA]
¡û
>W1610783314
LODL01000007
Betaproteobacteria
Dechloromonas denitrificans [LODL]
151331
151415
+
Leu
CAG
[ENA]
¡û
>W1610783357
LODL01000036
Betaproteobacteria
Dechloromonas denitrificans [LODL]
267
351
+
Leu
CAG
[ENA]
¡û
>WENV077222
AAFX01008695
Soil microbial communities from Minnesota Farm
241
155
-
Leu
CAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK