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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.120392 (31 seq.)
>W1710990991
LPXI01000031
Bacteroidota
Myroides marinus [LPXI]
8542
8462
-
Leu
CAA
[ENA]
¡û
>W1711005729
LQNU01000041
Bacteroidota
Myroides marinus [LQNU]
36664
36584
-
Leu
CAA
[ENA]
¡û
>W1711047415
LROZ01000008
Bacteroidota
Myroides odoratus [LROZ]
126112
126194
+
Leu
CAA
[ENA]
¡û
>W1711713436
MTDA01000070
Bacteroidota
Flavobacterium covae columnare [MTDA]
8693
8773
+
Leu
CAA
[ENA]
¡û
>W141008186
AGZK01000041
Bacteroidota
Myroides odoratimimus CCUG 3837 [AGZK]
4020
3938
-
Leu
CAA
[ENA]
¡û
>WENV181227557
OFDN01017302
[OFDN] hot springs metagenome; Water
970
890
-
Leu
CAA
[ENA]
¢þ
>WENV181401998
OFTY01000023
[OFTY] sludge metagenome; sludge
239735
239815
+
Leu
CAA
[ENA]
¢þ
>WENV181842305
OGVT01000448
[OGVT] freshwater metagenome; freshwater
2943
3023
+
Leu
CAA
[ENA]
¢þ
>C191153005
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
1005807
1005887
+
Leu
CAA
-
¡û
>W1910728197
MGWJ01000167
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_31_7 [MGWJ]
1855
1775
-
Leu
CAA
[ENA]
¡û
>W1911243231
NSGJ01000002
Bacteroidota
Myroides sp. N17-2 [NSGJ]
766
686
-
Leu
CAA
[ENA]
¡û
>C151072868
CP010817
Bacteroidota
Myroides profundi D25 [CP010817]
3974886
3974968
+
Leu
CAA
[Ensembl]
¡û
>W1511481078
JWJO01000037
Bacteroidota
Myroides marinus L41 [JWJO]
36567
36487
-
Leu
CAA
[ENA]
¡û
>C161059416
CP013690
Bacteroidota
Myroides odoratimimus PR63039 [CP013690]
1062683
1062765
+
Leu
CAA
[Ensembl]
¡û
>C161063710
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
2823193
2823273
+
Leu
CAA
[Ensembl]
¡û
>C161083232
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
1772631
1772551
-
Leu
CAA
-
¡û
>W121009216
AGED01000053
Bacteroidota
Myroides odoratimimus CCUG 12901 [AGED]
18754
18836
+
Leu
CAA
[ENA]
¡û
>W121009270
AGEE01000053
Bacteroidota
Myroides odoratimimus CIP 101113 [AGEE]
2477
2395
-
Leu
CAA
[ENA]
¡û
>W121124114
BAEX01000031
Bacteroidota
Myroides injenensis M09-0166 [BAEX]
33473
33555
+
Leu
CAA
[ENA]
¡û
>W1610061507
BCMQ01000009
Bacteroidota
Myroides odoratimimus [BCMQ]
111953
112035
+
Leu
CAA
[ENA]
¡û
>W1610845663
LPXI01000031
Bacteroidota
Myroides marinus [LPXI]
8542
8462
-
Leu
CAA
[ENA]
¡û
>W1610856379
LQNU01000041
Bacteroidota
Myroides marinus [LQNU]
36664
36584
-
Leu
CAA
[ENA]
¡û
>W1610888544
LROZ01000008
Bacteroidota
Myroides odoratus [LROZ]
126112
126194
+
Leu
CAA
[ENA]
¡û
>WENV079944
AATN01011159
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
203
119
-
Leu
CAA
[ENA]
>W1710059172
BCMQ01000009
Bacteroidota
Myroides odoratimimus [BCMQ]
111953
112035
+
Leu
CAA
[ENA]
¡û
>W1710541067
FNYA01000005
Bacteroidota
Flavobacterium terrigena [FNYA]
233596
233514
-
Leu
CAA
[ENA]
¡û
>W1710549192
FOEI01000008
Bacteroidota
Flavobacterium urocaniciphilum [FOEI]
24040
24122
+
Leu
CAA
[ENA]
¡û
>W1710551286
FOFY01000006
Bacteroidota
Myroides profundi [FOFY]
2605
2523
-
Leu
CAA
[ENA]
¡û
>W1710566256
FORU01000023
Bacteroidota
Myroides guanonis [FORU]
12751
12831
+
Leu
CAA
[ENA]
¡û
>W1710584546
FQVQ01000001
Bacteroidota
Flavobacterium fontis [FQVQ]
323196
323278
+
Leu
CAA
[ENA]
¡û
>W1710591188
FRBO01000002
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
372049
372131
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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