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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.121190 (33 seq.)
>W131169695
AREX01000011
Betaproteobacteria
Uliginosibacterium gangwonense DSM 18521 [AREX]
27696
27779
+
Leu
CAA
[ENA]
¡û
>W131050784
AMXB01000045
Betaproteobacteria
Thauera sp. 27 [AMXB]
5754
5838
+
Leu
CAA
[ENA]
¡û
>W131170343
ARFL01000003
Betaproteobacteria
Methyloversatilis discipulorum RZ94 [ARFL]
315748
315664
-
Leu
CAA
[ENA]
¡û
>C001281
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
973414
973498
+
Leu
CAA
[Ensembl]
¡û
>W131223773
AUCH01000016
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
64868
64784
-
Leu
CAA
[ENA]
¡û
>WENV170009702
APMI01001999
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
819
735
-
Leu
CAA
[ENA]
¢þ
>WENV170010072
APMI01007752
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
4992
5076
+
Leu
CAA
[ENA]
¢þ
>WENV170011839
APMI01095670
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
33
117
+
Leu
CAA
[ENA]
¢þ
>WENV170561016
CZCA01001998
[CZCA] anaerobic digester metagenome; anaerobic digester
14292
14208
-
Leu
CAA
[ENA]
¢þ
>WENV170651660
JRYG01000283
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
11189
11273
+
Leu
CAA
[ENA]
¢þ
>WENV170651692
JRYG01000524
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
1752
1668
-
Leu
CAA
[ENA]
¢þ
>WENV170653407
JRYJ01000151
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
22715
22799
+
Leu
CAA
[ENA]
¢þ
>WENV170714316
LNFM01067393
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2041
2124
+
Leu
CAA
[ENA]
¢þ
>C181081435
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
448516
448600
+
Leu
CAA
-
¡û
>C181164156
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
1014422
1014506
+
Leu
CAA
-
¡û
>C191022873
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
1150796
1150880
+
Leu
CAA
-
¡û
>W1910183550
BJNV01000012
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
91425
91341
-
Leu
CAA
[ENA]
¡û
>W1910828090
MWUM01000030
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
45469
45553
+
Leu
CAA
[ENA]
¡û
>W1911114385
NOIH01000026
Betaproteobacteria
Thauera propionica KNDSS-Mac4 [NOIH]
140198
140114
-
Leu
CAA
[ENA]
¡û
>W1810005474
BFBP01000002
Betaproteobacteria
Azospira sp. I13 [BFBP]
170624
170540
-
Leu
CAA
[ENA]
¡û
>SRA1002314
SRR001308.371072
Metagenomic characterization of a wastewater treatment plant (SRP000180)
162
246
+
Leu
CAA
[SRA]
>W1810195597
PKRR01000002
Betaproteobacteria
Uliginosibacterium sp. TH139 [PKRR]
48643
48559
-
Leu
CAA
[ENA]
¡û
>W1810679137
QKOE01000001
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
400305
400221
-
Leu
CAA
[ENA]
¡û
>C151076190
CP011072
Betaproteobacteria
Azoarcus sp. CIB [CP011072]
4210138
4210054
-
Leu
CAA
-
¡û
>W1511686450
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
1475220
1475304
+
Leu
CAA
[ENA]
¡û
>W11162800
AFHG01000028
Betaproteobacteria
Methyloversatilis universalis FAM5 [AFHG]
149857
149941
+
Leu
CAA
[ENA]
¡û
>C161075103
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
4020474
4020558
+
Leu
CAA
[Ensembl]
¡û
>W1610071690
BCUG01000016
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
59976
60060
+
Leu
CAA
[ENA]
¡û
>C131000318
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
4101222
4101138
-
Leu
CAA
[Ensembl]
¡û
>W1610617590
LGUD01000007
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
13789
13873
+
Leu
CAA
[ENA]
¡û
>W1710068892
BCUG01000016
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
59976
60060
+
Leu
CAA
[ENA]
¡û
>W1710595736
FTMD01000006
Betaproteobacteria
Aromatoleum tolulyticum tolulyticus [FTMD]
124084
124168
+
Leu
CAA
[ENA]
¡û
>W1710743140
LGUD01000007
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
13789
13873
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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