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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.121191 (25 seq.)
>W1711326578
MBFM01000001
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
478730
478814
+
Leu
CAG
[ENA]
¡û
>WENV180297038
OBJA01008148
[OBJA] soil metagenome; sediment, water from around vicinity
564
480
-
Leu
CAG
[ENA]
¢þ
>WENV180297039
OBJA01008148
[OBJA] soil metagenome; sediment, water from around vicinity
251
167
-
Leu
CAG
[ENA]
¢þ
>WENV180353776
OBLQ011039122
[OBLQ] soil metagenome; soil
41
125
+
Leu
CAG
[ENA]
¢þ
>WENV181165770
OEIS01161672
[OEIS] soil metagenome; soil
104
20
-
Leu
CAG
[ENA]
¢þ
>WENV181188757
OEOE01345941
[OEOE] activated sludge metagenome; Activated Sludge
185
101
-
Leu
CAG
[ENA]
¢þ
>WENV181189414
OEOF01039201
[OEOF] activated sludge metagenome; Activated Sludge
214
131
-
Leu
CAG
[ENA]
¢þ
>WENV181192982
OEPS011289734
[OEPS] soil metagenome; soil
57
141
+
Leu
CAG
[ENA]
¢þ
>WENV170009704
APMI01002018
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
7383
7299
-
Leu
CAG
[ENA]
¢þ
>WENV170009705
APMI01002018
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
7168
7084
-
Leu
CAG
[ENA]
¢þ
>WENV170009706
APMI01002018
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
6956
6872
-
Leu
CAG
[ENA]
¢þ
>WENV170650516
JRYE01001962
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
2672
2756
+
Leu
CAG
[ENA]
¢þ
>WENV170705308
LLEQ01005970
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
296
380
+
Leu
CAG
[ENA]
¢þ
>WENV170705309
LLEQ01005970
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
519
603
+
Leu
CAG
[ENA]
¢þ
>C181043013
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
651864
651780
-
Leu
CAG
-
¡û
>C181043014
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
651651
651567
-
Leu
CAG
-
¡û
>C181165178
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
592404
592320
-
Leu
CAG
-
¡û
>C181165179
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
592191
592107
-
Leu
CAG
-
¡û
>C181176827
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
725049
724965
-
Leu
CAG
-
¡û
>C181176828
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
724837
724753
-
Leu
CAG
-
¡û
>W1910183539
BJNV01000002
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
85084
85000
-
Leu
CAG
[ENA]
¡û
>W1910828053
MWUM01000003
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
47610
47694
+
Leu
CAG
[ENA]
¡û
>W1910828054
MWUM01000003
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
47857
47941
+
Leu
CAG
[ENA]
¡û
>W1910828055
MWUM01000003
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
48100
48184
+
Leu
CAG
[ENA]
¡û
>W1611063314
MBFM01000001
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
478730
478814
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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