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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.121519 (105 seq.)
>W1710834846
LLJH01000008
Actinomycetota
Cutibacterium avidum [LLJH]
23397
23318
-
Gln
TTG
[ENA]
¡û
>W1710834869
LLJI01000001
Actinomycetota
Cutibacterium avidum [LLJI]
23507
23428
-
Gln
TTG
[ENA]
¡û
>W1710834921
LLJJ01000002
Actinomycetota
Cutibacterium avidum [LLJJ]
23397
23318
-
Gln
TTG
[ENA]
¡û
>W1711055703
LRVD01000003
Actinomycetota
Cutibacterium avidum [LRVD]
831654
831733
+
Gln
TTG
[ENA]
¡û
>W1711108066
LTTJ01000011
Actinomycetota
Propionibacterium sp. HMSC062D05 [LTTJ]
87443
87522
+
Gln
TTG
[ENA]
¡û
>W1711267720
LZCI01000013
Actinomycetota
Cutibacterium acnes [LZCI]
458512
458591
+
Gln
TTG
[ENA]
¡û
>C171054426
CP016954
Actinomycetota
Cutibacterium avidum DPC 6544 [CP016954]
954854
954775
-
Gln
TTG
-
¡û
>C171055664
CP017040
Actinomycetota
Cutibacterium modestum F0672 [CP017040]
800297
800215
-
Gln
TTG
-
¡û
>W131206182
ATFM01000005
Actinomycetota
Propionibacterium sp. HGH0353 [ATFM]
950313
950392
+
Gln
TTG
[ENA]
¡û
>W131206141
ATFL01000012
Actinomycetota
Propionibacterium sp. oral taxon 192 oral taxon 192 str. F0372 [ATFL]
271283
271362
+
Gln
TTG
[ENA]
¡û
>WENV180165517
OAVK01003474
[OAVK] human gut metagenome; faeces
1589
1668
+
Gln
TTG
[ENA]
¢þ
>WENV180230001
OBCK01000220
[OBCK] human gut metagenome; human gut
4693
4614
-
Gln
TTG
[ENA]
¢þ
>WENV180241345
OBDG01000078
[OBDG] human gut metagenome; human gut
23270
23191
-
Gln
TTG
[ENA]
¢þ
>WENV180421037
OBVP01003448
[OBVP] human gut metagenome; faeces
522
443
-
Gln
TTG
[ENA]
¢þ
>WENV180422295
OBVS01006501
[OBVS] human gut metagenome; faeces
438
517
+
Gln
TTG
[ENA]
¢þ
>WENV180556117
OCJQ01000630
[OCJQ] human gut metagenome; Infant 2 DOL 15 gut
143
64
-
Gln
TTG
[ENA]
¢þ
>WENV180559481
OCKC01000213
[OCKC] human gut metagenome; Infant 2 DOL 26 gut
11211
11132
-
Gln
TTG
[ENA]
¢þ
>WENV180562059
OCLA01000080
[OCLA] human gut metagenome; human gut
23270
23191
-
Gln
TTG
[ENA]
¢þ
>WENV180564527
OCLE01000071
[OCLE] human gut metagenome; human gut
12260
12339
+
Gln
TTG
[ENA]
¢þ
>WENV180568704
OCLN01000164
[OCLN] human gut metagenome; human gut
6018
5939
-
Gln
TTG
[ENA]
¢þ
>WENV180568884
OCLO01000289
[OCLO] human gut metagenome; human gut
735
814
+
Gln
TTG
[ENA]
¢þ
>WENV180568987
OCLP01000576
[OCLP] human gut metagenome; human gut
1002
923
-
Gln
TTG
[ENA]
¢þ
>W141056246
AOUA01000274
Actinomycetota
Cutibacterium avidum TM16 [AOUA]
550
629
+
Gln
TTG
[ENA]
¡û
>WENV180625009
OCQI01000059
[OCQI] human gut metagenome; human gut
10903
10982
+
Gln
TTG
[ENA]
¢þ
>WENV180625130
OCQJ01000047
[OCQJ] human gut metagenome; human gut
10903
10982
+
Gln
TTG
[ENA]
¢þ
>WENV180639235
OCRJ01000020
[OCRJ] human gut metagenome; human gut
52984
52905
-
Gln
TTG
[ENA]
¢þ
>WENV180838914
ODKH01000241
[ODKH] human metagenome; G_DNA_Anterior nares
4422
4501
+
Gln
TTG
[ENA]
¢þ
>WENV181326485
OFLM01000001
[OFLM] metagenome; faeces
27599
27520
-
Gln
TTG
[ENA]
¢þ
>WENV181327052
OFLO01000096
[OFLO] metagenome; faeces
23489
23410
-
Gln
TTG
[ENA]
¢þ
>WENV181328524
OFLU01000081
[OFLU] metagenome; faeces
32099
32178
+
Gln
TTG
[ENA]
¢þ
>WENV181328747
OFLV01000002
[OFLV] metagenome; faeces
23474
23395
-
Gln
TTG
[ENA]
¢þ
>WENV181329188
OFLW01000032
[OFLW] metagenome; faeces
23559
23480
-
Gln
TTG
[ENA]
¢þ
>W141155761
AXMF01000003
Actinomycetota
Propionibacterium sp. KPL2005 [AXMF]
1041573
1041652
+
Gln
TTG
[ENA]
¡û
>W141155842
AXMH01000001
Actinomycetota
Propionibacterium sp. KPL2000 [AXMH]
1372239
1372318
+
Gln
TTG
[ENA]
¡û
>W141155938
AXMJ01000003
Actinomycetota
Propionibacterium sp. KPL1852 [AXMJ]
836260
836339
+
Gln
TTG
[ENA]
¡û
>W141156115
AXMN01000001
Actinomycetota
Propionibacterium sp. KPL1838 [AXMN]
29902
29823
-
Gln
TTG
[ENA]
¡û
>WENV181804502
OGSF01001629
[OGSF] human gut metagenome; fecal sample 3 from infant 5
1166
1087
-
Gln
TTG
[ENA]
¢þ
>WENV181806247
OGSK01000396
[OGSK] human gut metagenome; fecal sample 2 from infant 5
3310
3231
-
Gln
TTG
[ENA]
¢þ
>WENV181814457
OGTG01000179
[OGTG] human gut metagenome; fecal sample 1 from infant 4
20392
20313
-
Gln
TTG
[ENA]
¢þ
>WENV181818427
OGTS01001481
[OGTS] human gut metagenome; fecal sample 4 from infant 4
2166
2087
-
Gln
TTG
[ENA]
¢þ
>WENV181821311
OGUE01000444
[OGUE] human gut metagenome; fecal sample 1 from infant 5
6765
6844
+
Gln
TTG
[ENA]
¢þ
>W141233244
BAVO01000006
Actinomycetota
Cutibacterium acnes JCM 18918 [BAVO]
97859
97938
+
Gln
TTG
[ENA]
¡û
>WENV182643076
OJLS01000467
[OJLS] metagenome; surface
2620
2541
-
Gln
TTG
[ENA]
¢þ
>WENV182799865
OJTW01005691
[OJTW] human gut metagenome; human gut
170
91
-
Gln
TTG
[ENA]
¢þ
>WENV182804304
OJUT01000127
[OJUT] human gut metagenome; human gut
23586
23507
-
Gln
TTG
[ENA]
¢þ
>WENV182804839
OJUX01002465
[OJUX] human gut metagenome; human gut
897
976
+
Gln
TTG
[ENA]
¢þ
>WENV182806786
OJVS01000096
[OJVS] human gut metagenome; human gut
16679
16758
+
Gln
TTG
[ENA]
¢þ
>WENV182809724
OJWS01000140
[OJWS] human gut metagenome; human gut
15223
15144
-
Gln
TTG
[ENA]
¢þ
>WENV182812478
OJXT01000001
[OJXT] human gut metagenome; human gut
14877
14798
-
Gln
TTG
[ENA]
¢þ
>WENV182815048
OJYO01000498
[OJYO] human gut metagenome; human gut
5396
5475
+
Gln
TTG
[ENA]
¢þ
>WENV182815338
OJYQ01001893
[OJYQ] human gut metagenome; human gut
253
174
-
Gln
TTG
[ENA]
¢þ
>WENV182815388
OJYR01000003
[OJYR] human gut metagenome; human gut
188921
189000
+
Gln
TTG
[ENA]
¢þ
>WENV182815966
OJYV01000083
[OJYV] human gut metagenome; human gut
23052
22973
-
Gln
TTG
[ENA]
¢þ
>WENV182817737
OJZM01000410
[OJZM] human gut metagenome; human gut
15218
15139
-
Gln
TTG
[ENA]
¢þ
>WENV182821375
OKAW01000185
[OKAW] human gut metagenome; human gut
2580
2659
+
Gln
TTG
[ENA]
¢þ
>WENV182821692
OKBA01000097
[OKBA] human gut metagenome; human gut
11313
11392
+
Gln
TTG
[ENA]
¢þ
>WENV182825919
OKCO01000100
[OKCO] human gut metagenome; human gut
10925
11004
+
Gln
TTG
[ENA]
¢þ
>WENV182826512
OKCS01000216
[OKCS] human gut metagenome; human gut
258
337
+
Gln
TTG
[ENA]
¢þ
>WENV182826730
OKCU01000092
[OKCU] human gut metagenome; human gut
10925
11004
+
Gln
TTG
[ENA]
¢þ
>WENV182827367
OKCZ01000005
[OKCZ] human gut metagenome; human gut
95519
95598
+
Gln
TTG
[ENA]
¢þ
>WENV182830521
OKDZ01000126
[OKDZ] human gut metagenome; human gut
23052
22973
-
Gln
TTG
[ENA]
¢þ
>WENV182832037
OKEJ01000076
[OKEJ] human gut metagenome; human gut
10912
10991
+
Gln
TTG
[ENA]
¢þ
>WENV182837337
OKGF01001662
[OKGF] human gut metagenome; human gut
192
271
+
Gln
TTG
[ENA]
¢þ
>WENV182840978
OKHP01000279
[OKHP] human gut metagenome; human gut
14856
14777
-
Gln
TTG
[ENA]
¢þ
>WENV182841438
OKHV01000134
[OKHV] human gut metagenome; human gut
648
727
+
Gln
TTG
[ENA]
¢þ
>WENV182842611
OKIF01000128
[OKIF] human gut metagenome; human gut
23295
23216
-
Gln
TTG
[ENA]
¢þ
>WENV182849227
OKKO01002701
[OKKO] human gut metagenome; human gut
429
508
+
Gln
TTG
[ENA]
¢þ
>WENV182850784
OKLF01001409
[OKLF] human gut metagenome; human gut
124
203
+
Gln
TTG
[ENA]
¢þ
>WENV182851151
OKLL01000001
[OKLL] human gut metagenome; human gut
569175
569254
+
Gln
TTG
[ENA]
¢þ
>WENV182851895
OKLS01005896
[OKLS] human gut metagenome; human gut
632
711
+
Gln
TTG
[ENA]
¢þ
>WENV182852334
OKLW01003050
[OKLW] human gut metagenome; human gut
708
629
-
Gln
TTG
[ENA]
¢þ
>WENV182853269
OKMK01000010
[OKMK] human gut metagenome; human gut
122581
122660
+
Gln
TTG
[ENA]
¢þ
>WENV182857436
OKNX01000601
[OKNX] human gut metagenome; human gut
2749
2670
-
Gln
TTG
[ENA]
¢þ
>WENV182860109
OKOR01000108
[OKOR] human gut metagenome; human gut
10912
10991
+
Gln
TTG
[ENA]
¢þ
>WENV182860496
OKOW01001472
[OKOW] human gut metagenome; human gut
1303
1224
-
Gln
TTG
[ENA]
¢þ
>WENV182861323
OKPE01000082
[OKPE] human gut metagenome; human gut
2654
2733
+
Gln
TTG
[ENA]
¢þ
>WENV182863330
OKPS01000226
[OKPS] human gut metagenome; human gut
10445
10524
+
Gln
TTG
[ENA]
¢þ
>WENV182864586
OKQD01002291
[OKQD] human gut metagenome; human gut
441
362
-
Gln
TTG
[ENA]
¢þ
>WENV182941831
OKVG01009746
[OKVG] human gut metagenome; human gut
1527
1448
-
Gln
TTG
[ENA]
¢þ
>WENV182960995
OKWK01000074
[OKWK] human gut metagenome; stool
120586
120665
+
Gln
TTG
[ENA]
¢þ
>WENV183083767
OLJD01002173
[OLJD] human gut metagenome; human gut
346
425
+
Gln
TTG
[ENA]
¢þ
>WENV183087399
OLJH01001179
[OLJH] human gut metagenome; human gut
1064
985
-
Gln
TTG
[ENA]
¢þ
>WENV170979384
MTKZ01088115
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1280
1199
-
Gln
TTG
[ENA]
¢þ
>W1910852664
NBIO01000002
Actinomycetota
Cutibacterium avidum CI878 [NBIO]
351781
351860
+
Gln
TTG
[ENA]
¡û
>W1910852711
NBIP01000003
Actinomycetota
Cutibacterium avidum CI882 [NBIP]
23859
23780
-
Gln
TTG
[ENA]
¡û
>W1910852795
NBIQ01000015
Actinomycetota
Cutibacterium avidum CI828 [NBIQ]
29029
28950
-
Gln
TTG
[ENA]
¡û
>W1910852839
NBIR01000014
Actinomycetota
Cutibacterium avidum CI855 [NBIR]
11294
11373
+
Gln
TTG
[ENA]
¡û
>W1910852852
NBIS01000002
Actinomycetota
Cutibacterium avidum CI853 [NBIS]
44439
44518
+
Gln
TTG
[ENA]
¡û
>W1911137656
NOWI01000003
Actinomycetota
Cutibacterium avidum P16-029 [NOWI]
23410
23331
-
Gln
TTG
[ENA]
¡û
>W10120785
ADXQ01000006
Actinomycetota
Cutibacterium acnes HL087PA1 [ADXQ]
288491
288570
+
Gln
TTG
[ENA]
¡û
>W10122122
ADYU01000003
Actinomycetota
Cutibacterium acnes HL036PA2 [ADYU]
288391
288470
+
Gln
TTG
[ENA]
¡û
>W10122491
ADZC01000013
Actinomycetota
Cutibacterium acnes HL083PA1 [ADZC]
66277
66356
+
Gln
TTG
[ENA]
¡û
>C11116492
CP002815
Actinomycetota
Cutibacterium acnes 6609 [CP002815]
583335
583414
+
Gln
TTG
[Ensembl]
¡û
>W11125911
ADWB01000004
Actinomycetota
Cutibacterium acnes HL096PA3 [ADWB]
288351
288430
+
Gln
TTG
[ENA]
¡û
>W11127529
ADXQ01000006
Actinomycetota
Cutibacterium acnes HL087PA1 [ADXQ]
288491
288570
+
Gln
TTG
[ENA]
¡û
>W11128866
ADYU01000003
Actinomycetota
Cutibacterium acnes HL036PA2 [ADYU]
288391
288470
+
Gln
TTG
[ENA]
¡û
>W11129235
ADZC01000013
Actinomycetota
Cutibacterium acnes HL083PA1 [ADZC]
66277
66356
+
Gln
TTG
[ENA]
¡û
>W11174116
AFUK01000001
Actinomycetota
Propionibacterium sp. CC003-HC2 [AFUK]
1091010
1091089
+
Gln
TTG
[ENA]
¡û
>W11177572
AGBA01000013
Actinomycetota
Cutibacterium avidum ATCC 25577 [AGBA]
556026
556105
+
Gln
TTG
[ENA]
¡û
>C121007912
CP003195
Actinomycetota
Cutibacterium acnes TypeIA2 P.acn33 [CP003195]
565565
565644
+
Gln
TTG
[Ensembl]
¡û
>C131015028
CP005287
Actinomycetota
Cutibacterium avidum 44067 [CP005287]
1783341
1783262
-
Gln
TTG
[Ensembl]
¡û
>W1610896749
LRVD01000003
Actinomycetota
Cutibacterium avidum [LRVD]
831654
831733
+
Gln
TTG
[ENA]
¡û
>W1610958214
LVJK01000026
Actinomycetota
Cutibacterium avidum HL083PV1 [LVJK]
9354
9433
+
Gln
TTG
[ENA]
¡û
>W1610958252
LVJL01000013
Actinomycetota
Cutibacterium avidum HL307PV1 [LVJL]
14916
14837
-
Gln
TTG
[ENA]
¡û
>W1611028913
LZCI01000013
Actinomycetota
Cutibacterium acnes [LZCI]
458512
458591
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK