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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.121534 (44 seq.)
>W1710786713
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
1660119
1660038
-
Leu
TAG
[ENA]
¡û
>W1710876778
LMPN01000029
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
1564
1645
+
Leu
TAG
[ENA]
¡û
>W1711009647
LQQV01000061
Bacillota
Brevibacillus parabrevis [LQQV]
118432
118351
-
Leu
TAG
[ENA]
¡û
>W1711168656
LVYG01000013
Bacillota
Brevibacillus brevis [LVYG]
1107
1188
+
Leu
TAG
[ENA]
¡û
>W131006791
AHKL01000035
Bacillota
Brevibacillus brevis FJAT-0809-GLX [AHKL]
459
540
+
Leu
TAG
[ENA]
¡û
>W131086524
AOBR01000279
Bacillota
Brevibacillus agri BAB-2500 [AOBR]
953
1034
+
Leu
TAG
[ENA]
¡û
>W131104110
APBN01000006
Bacillota
Brevibacillus borstelensis AK1 [APBN]
253090
253009
-
Leu
TAG
[ENA]
¡û
>W1711799970
MXAR01000002
Bacillota
Brevibacillus brevis [MXAR]
5737
5818
+
Leu
TAG
[ENA]
¡û
>W141026748
AKYF01000012
Bacillota
Brevibacillus brevis X23 [AKYF]
410
491
+
Leu
TAG
[ENA]
¡û
>W141026749
AKYF01000012
Bacillota
Brevibacillus brevis X23 [AKYF]
692
773
+
Leu
TAG
[ENA]
¡û
>W141093556
AVBJ01000077
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
33705
33624
-
Leu
TAG
[ENA]
¡û
>W141185479
AYJU01000016
Bacillota
Brevibacillus panacihumi W25 [AYJU]
470897
470816
-
Leu
TAG
[ENA]
¡û
>W141288852
JAQG01000014
Bacillota
Brevibacillus borstelensis Jul-96 [JAQG]
28217
28136
-
Leu
TAG
[ENA]
¡û
>W141291625
JATL01000136
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
129
48
-
Leu
TAG
[ENA]
¡û
>WENV170593858
FUFK011045466
[FUFK] metagenome; unknown
412
331
-
Leu
TAG
[ENA]
¢þ
>C181030658
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
6034565
6034646
+
Leu
TAG
-
¡û
>C181082040
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
564530
564611
+
Leu
TAG
-
¡û
>C181188429
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
552974
553055
+
Leu
TAG
-
¡û
>C191041906
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
5292349
5292268
-
Leu
TAG
-
¡û
>C191207618
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
5686996
5686915
-
Leu
TAG
-
¡û
>W141808937
JPRB01000005
Bacillota
Brevibacillus borstelensis cifa_chp40 [JPRB]
1338
1419
+
Leu
TAG
[ENA]
¡û
>W1910183523
BJNU01000066
Bacillota
Brevibacillus brevis NBRC 15304 [BJNU]
61
142
+
Leu
TAG
[ENA]
¡û
>W1910183911
BJOD01000057
Bacillota
Brevibacillus agri NBRC 15538 [BJOD]
34194
34113
-
Leu
TAG
[ENA]
¡û
>C09101446
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
546424
546505
+
Leu
TAG
[Ensembl]
¡û
>W1810001182
BEXF01000014
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
1432
1513
+
Leu
TAG
[ENA]
¡û
>W1810389843
PXXZ01000004
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
1304
1385
+
Leu
TAG
[ENA]
¡û
>W1810391292
PXZL01000014
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
19269
19188
-
Leu
TAG
[ENA]
¡û
>W1810391463
PXZM01000068
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
18451
18370
-
Leu
TAG
[ENA]
¡û
>W1810391528
PXZN01000019
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
1209
1290
+
Leu
TAG
[ENA]
¡û
>W1810391599
PXZO01000020
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
1179
1260
+
Leu
TAG
[ENA]
¡û
>W1810787379
QRDR01000007
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
1423
1504
+
Leu
TAG
[ENA]
¡û
>W1511500270
JXAV01000054
Bacillota
Brevibacillus borstelensis LChuR05 [JXAV]
1400
1481
+
Leu
TAG
[ENA]
¡û
>W1511629723
LDCN01000006
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
325167
325086
-
Leu
TAG
[ENA]
¡û
>W1511629738
LDCN01000006
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
322218
322137
-
Leu
TAG
[ENA]
¡û
>W1511645814
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
1366
1447
+
Leu
TAG
[ENA]
¡û
>W1511699535
LGIQ01000002
Bacillota
Brevibacillus reuszeri DSM 9887 [LGIQ]
371
452
+
Leu
TAG
[ENA]
¡û
>W1511700161
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
4111527
4111446
-
Leu
TAG
[ENA]
¡û
>W121085046
AKIX01000138
Bacillota
Brevibacillus sp. BC25 [AKIX]
286
367
+
Leu
TAG
[ENA]
¡û
>W1610650568
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
1660119
1660038
-
Leu
TAG
[ENA]
¡û
>W1610739124
LMPN01000029
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
1564
1645
+
Leu
TAG
[ENA]
¡û
>W1610858167
LQQV01000061
Bacillota
Brevibacillus parabrevis [LQQV]
118432
118351
-
Leu
TAG
[ENA]
¡û
>W1610978451
LVYG01000013
Bacillota
Brevibacillus brevis [LVYG]
1107
1188
+
Leu
TAG
[ENA]
¡û
>W1710081092
BDFB01000006
Bacillota
Brevibacillus brevis [BDFB]
544869
544788
-
Leu
TAG
[ENA]
¡û
>W1710566119
FORT01000003
Bacillota
Brevibacillus centrosporus OK042 [FORT]
455154
455073
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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