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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.121738 (102 seq.)
>W1710802947
LJYE01000110
Alphaproteobacteria
Bradyrhizobium pachyrhizi [LJYE]
284972
284888
-
Leu
GAG
[ENA]
¡û
>W1710802963
LJYF01000017
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
11663
11747
+
Leu
GAG
[ENA]
¡û
>W1710803024
LJYG01000097
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
66569
66485
-
Leu
GAG
[ENA]
¡û
>W1710891404
LNCU01000043
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
5598
5514
-
Leu
GAG
[ENA]
¡û
>W1711067425
LSEF01000113
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
9606
9690
+
Leu
GAG
[ENA]
¡û
>W1711073014
LSIC01000212
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
17382
17298
-
Leu
GAG
[ENA]
¡û
>W1711129585
LUUB01000030
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
93140
93224
+
Leu
GAG
[ENA]
¡û
>W1711138859
LVEM01000001
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
639051
639135
+
Leu
GAG
[ENA]
¡û
>W1711180118
LWIG01000014
Alphaproteobacteria
Bradyrhizobium sacchari BR10280 [LWIG]
332211
332127
-
Leu
GAG
[ENA]
¡û
>W1711193148
LWUI01000024
Alphaproteobacteria
Bradyrhizobium elkanii [LWUI]
107828
107744
-
Leu
GAG
[ENA]
¡û
>W1711206727
LXEM01000013
Alphaproteobacteria
Bradyrhizobium elkanii [LXEM]
107823
107739
-
Leu
GAG
[ENA]
¡û
>W1711487042
MKFI01000001
Alphaproteobacteria
Bradyrhizobium mercantei SEMIA 6399 [MKFI]
412168
412084
-
Leu
GAG
[ENA]
¡û
>W1711613037
MOXO01000578
Alphaproteobacteria
Bradyrhizobium elkanii [MOXO]
791
707
-
Leu
GAG
[ENA]
¡û
>W1712049620
NFUH01000316
Alphaproteobacteria
Bradyrhizobium guangdongense [NFUH]
11532
11616
+
Leu
GAG
[ENA]
¡û
>C171131938
LT859959
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [LT859959]
3094673
3094757
+
Leu
GAG
-
¡û
>W131164106
ARAG01000009
Alphaproteobacteria
Bradyrhizobium elkanii USDA 76 [ARAG]
1593939
1593855
-
Leu
GAG
[ENA]
¡û
>W131228565
AUGA01000041
Alphaproteobacteria
Bradyrhizobium sp. th.b2 [AUGA]
15471
15555
+
Leu
GAG
[ENA]
¡û
>W131170238
ARFJ01000007
Alphaproteobacteria
Bradyrhizobium japonicum USDA 124 [ARFJ]
376734
376818
+
Leu
GAG
[ENA]
¡û
>W131227278
AUFA01000012
Alphaproteobacteria
Bradyrhizobium sp. Cp5.3 [AUFA]
8882
8966
+
Leu
GAG
[ENA]
¡û
>C004065
CP000494
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [CP000494]
5131078
5130994
-
Leu
GAG
[Ensembl]
¡û
>C004090
CU234118
Alphaproteobacteria
Bradyrhizobium sp. ORS 278 ORS278 [CU234118]
3464225
3464309
+
Leu
GAG
[Ensembl]
¡û
>W141043074
AMFB01000047
Alphaproteobacteria
Bradyrhizobium sp. DFCI-1 [AMFB]
19238
19154
-
Leu
GAG
[ENA]
¡û
>W141063650
APJD01000010
Alphaproteobacteria
Bradyrhizobium sp. OHSU_III [APJD]
23190
23274
+
Leu
GAG
[ENA]
¡û
>WENV181371102
OFQU01025780
[OFQU] wastewater metagenome; Exp Tend CN 90WW
123
207
+
Leu
GAG
[ENA]
¢þ
>WENV181375327
OFQY01074901
[OFQY] wastewater metagenome; Exp Tend VB 10WW
184
100
-
Leu
GAG
[ENA]
¢þ
>WENV181379313
OFRD01000399
[OFRD] wastewater metagenome; Exp Tend CN 100WW
13735
13819
+
Leu
GAG
[ENA]
¢þ
>WENV181383955
OFRH01002315
[OFRH] wastewater metagenome; Exp Tend NO 100WW
927
843
-
Leu
GAG
[ENA]
¢þ
>WENV181385211
OFRI01049421
[OFRI] wastewater metagenome; Exp Tend VB 90WW
651
567
-
Leu
GAG
[ENA]
¢þ
>WENV181385901
OFRL01000071
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
40231
40315
+
Leu
GAG
[ENA]
¢þ
>WENV181399832
OFSF01000010
[OFSF] wastewater metagenome; Exp Tend VB 100WW
50515
50431
-
Leu
GAG
[ENA]
¢þ
>W141149750
AWZU01000011
Alphaproteobacteria
Bradyrhizobium sp. ARR65 [AWZU]
66143
66227
+
Leu
GAG
[ENA]
¡û
>W141150120
AXAD01000003
Alphaproteobacteria
Bradyrhizobium arachidis USDA 3384 [AXAD]
775243
775159
-
Leu
GAG
[ENA]
¡û
>W141150341
AXAH01000028
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3254 [AXAH]
8216
8300
+
Leu
GAG
[ENA]
¡û
>W141151012
AXAS01000046
Alphaproteobacteria
Bradyrhizobium sp. Ec3.3 [AXAS]
11129
11213
+
Leu
GAG
[ENA]
¡û
>W141151208
AXAW01000025
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3259 [AXAW]
97836
97752
-
Leu
GAG
[ENA]
¡û
>W141151349
AXAZ01000079
Alphaproteobacteria
Bradyrhizobium sp. WSM1743 [AXAZ]
33725
33809
+
Leu
GAG
[ENA]
¡û
>W141151461
AXBC01000003
Alphaproteobacteria
Bradyrhizobium genosp. SA-4 SA-4 str. CB756 [AXBC]
1057339
1057423
+
Leu
GAG
[ENA]
¡û
>W141233905
BAWE01000005
Alphaproteobacteria
Bradyrhizobium sp. DOA9 [BAWE]
296481
296397
-
Leu
GAG
[ENA]
¡û
>WENV182409128
OIFG01001944
[OIFG] human gut metagenome; stool
1768
1852
+
Leu
GAG
[ENA]
¢þ
>W141240096
CAFK01000257
Alphaproteobacteria
Bradyrhizobium sp. STM 3843 [CAFK]
10153
10237
+
Leu
GAG
[ENA]
¡û
>W141278098
JAFC01000008
Alphaproteobacteria
Bradyrhizobium elkanii USDA 94 [JAFC]
40157
40073
-
Leu
GAG
[ENA]
¡û
>WENV182962908
OKWO01006891
[OKWO] human gut metagenome; stool
69
153
+
Leu
GAG
[ENA]
¢þ
>WENV182962928
OKWP01000008
[OKWP] human gut metagenome; stool
176720
176804
+
Leu
GAG
[ENA]
¢þ
>WENV182966366
OKWV01001733
[OKWV] human gut metagenome; stool
554
638
+
Leu
GAG
[ENA]
¢þ
>WENV183636553
OOKD01141503
[OOKD] human gut metagenome; Skin biopsy
429
345
-
Leu
GAG
[ENA]
¢þ
>C181113168
CP025113
Alphaproteobacteria
Bradyrhizobium sp. SK17 [CP025113]
4648354
4648438
+
Leu
GAG
-
¡û
>C181203852
LS398110
Alphaproteobacteria
Bradyrhizobium vignae [LS398110]
3538747
3538831
+
Leu
GAG
-
¡û
>C191019734
CP022221
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51778 [CP022221]
4306272
4306356
+
Leu
GAG
-
¡û
>C191071690
CP030051
Alphaproteobacteria
Bradyrhizobium guangdongense CCBAU 51649 [CP030051]
4606423
4606339
-
Leu
GAG
-
¡û
>C191071716
CP030053
Alphaproteobacteria
Bradyrhizobium guangzhouense CCBAU 51670 [CP030053]
3144802
3144886
+
Leu
GAG
-
¡û
>W09104131
AALJ01000011
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [AALJ]
103724
103640
-
Leu
GAG
[ENA]
¡û
>W1910183148
BJNL01000080
Alphaproteobacteria
Bradyrhizobium elkanii NBRC 14791 [BJNL]
9135
9219
+
Leu
GAG
[ENA]
¡û
>W1910598243
LAXE01000001
Alphaproteobacteria
Bradyrhizobium sp. SUTN9-2 [LAXE]
3787217
3787301
+
Leu
GAG
[ENA]
¡û
>W1910598980
LBJM01000004
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51787 [LBJM]
66713
66797
+
Leu
GAG
[ENA]
¡û
>W1910693486
MDEP01000051
Alphaproteobacteria
Bradyrhizobium sp. UASWS1016 [MDEP]
480158
480074
-
Leu
GAG
[ENA]
¡û
>W1910840275
MZXW01000022
Alphaproteobacteria
Bradyrhizobium betae Opo-243 [MZXW]
284289
284205
-
Leu
GAG
[ENA]
¡û
>W1911245290
NSJY01000016
Alphaproteobacteria
Bradyrhizobium sp. UFLA03-84 [NSJY]
269415
269331
-
Leu
GAG
[ENA]
¡û
>W1911409920
NWTG01000018
Alphaproteobacteria
Bradyrhizobium sp. C9 [NWTG]
158483
158567
+
Leu
GAG
[ENA]
¡û
>W1911629621
PSRT01000185
Alphaproteobacteria
Bradyrhizobium genosp. SA-3 SA-3 Rp7b [PSRT]
3305
3389
+
Leu
GAG
[ENA]
¡û
>W1810367848
PVYZ01000001
Alphaproteobacteria
Rhizobium tropici NFR14 [PVYZ]
661728
661644
-
Leu
GAG
[ENA]
¡û
>W1810400108
PYFV01000009
Alphaproteobacteria
Bradyrhizobium sp. MOS004 [PYFV]
226668
226584
-
Leu
GAG
[ENA]
¡û
>SRA1014008
SRR023821.38109
Pru Toh Daeng peat swamp (SRP001114)
19
103
+
Leu
GAG
[SRA]
>SRA1014014
SRR023821.40113
Pru Toh Daeng peat swamp (SRP001114)
19
103
+
Leu
GAG
[SRA]
>SRA1014074
SRR023821.84668
Pru Toh Daeng peat swamp (SRP001114)
19
103
+
Leu
GAG
[SRA]
>W1511507999
JXOF01000183
Alphaproteobacteria
Bradyrhizobium elkanii UASWS1015 [JXOF]
37532
37616
+
Leu
GAG
[ENA]
¡û
>W1511681374
LFIP01000005
Alphaproteobacteria
Bradyrhizobium embrapense SEMIA 6208 [LFIP]
53655
53571
-
Leu
GAG
[ENA]
¡û
>W1511681484
LFIQ01000092
Alphaproteobacteria
Bradyrhizobium pachyrhizi PAC 48 [LFIQ]
60503
60587
+
Leu
GAG
[ENA]
¡û
>W1511684028
LFLZ01000017
Alphaproteobacteria
Bradyrhizobium tropiciagri SEMIA 6148 [LFLZ]
8775
8859
+
Leu
GAG
[ENA]
¡û
>W1511706013
LGTB01000044
Alphaproteobacteria
Bradyrhizobium viridifuturi SEMIA 690 [LGTB]
35568
35652
+
Leu
GAG
[ENA]
¡û
>C161062544
CP013949
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [CP013949]
4757158
4757074
-
Leu
GAG
[Ensembl]
¡û
>W121062440
AJJK01000447
Alphaproteobacteria
Bradyrhizobium elkanii 587 [AJJK]
764
680
-
Leu
GAG
[ENA]
¡û
>W121065212
AJPV01000307
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 05737 [AJPV]
39120
39036
-
Leu
GAG
[ENA]
¡û
>W121065264
AJPW01000469
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 43297 [AJPW]
32658
32574
-
Leu
GAG
[ENA]
¡û
>W121065650
AJQE01000364
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 43298 [AJQE]
49345
49429
+
Leu
GAG
[ENA]
¡û
>W121065887
AJQJ01000419
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 05623 [AJQJ]
19320
19236
-
Leu
GAG
[ENA]
¡û
>W121065933
AJQK01000283
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 25021 [AJQK]
49236
49320
+
Leu
GAG
[ENA]
¡û
>W121065975
AJQL01000358
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 35157 [AJQL]
42360
42444
+
Leu
GAG
[ENA]
¡û
>W121085092
AKIY01000279
Alphaproteobacteria
Bradyrhizobium sp. YR681 [AKIY]
9891
9975
+
Leu
GAG
[ENA]
¡û
>W121127070
CAFH01000041
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [CAFH]
60086
60002
-
Leu
GAG
[ENA]
¡û
>W121127114
CAFI01000059
Alphaproteobacteria
Bradyrhizobium sp. ORS 375 [CAFI]
25925
26009
+
Leu
GAG
[ENA]
¡û
>W121127160
CAFJ01000096
Alphaproteobacteria
Bradyrhizobium sp. STM 3809 [CAFJ]
3048
2964
-
Leu
GAG
[ENA]
¡û
>W1610049413
BBEX01000997
Alphaproteobacteria
Bradyrhizobium sp. 17-4 [BBEX]
1782
1866
+
Leu
GAG
[ENA]
¡û
>W1610514447
FMAE01000008
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
310489
310573
+
Leu
GAG
[ENA]
¡û
>W1610550291
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
2516276
2516360
+
Leu
GAG
[ENA]
¡û
>W1610666804
LJYE01000110
Alphaproteobacteria
Bradyrhizobium pachyrhizi [LJYE]
284972
284888
-
Leu
GAG
[ENA]
¡û
>W1610666820
LJYF01000017
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
11663
11747
+
Leu
GAG
[ENA]
¡û
>W1610666881
LJYG01000097
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
66569
66485
-
Leu
GAG
[ENA]
¡û
>W1610751769
LNCU01000043
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
5598
5514
-
Leu
GAG
[ENA]
¡û
>W1610907995
LSEF01000113
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
9606
9690
+
Leu
GAG
[ENA]
¡û
>W1610912274
LSIC01000212
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
17382
17298
-
Leu
GAG
[ENA]
¡û
>W1610940658
LUUB01000030
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
93140
93224
+
Leu
GAG
[ENA]
¡û
>W1610949867
LVEM01000001
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
639051
639135
+
Leu
GAG
[ENA]
¡û
>W1710045812
BBEX01000997
Alphaproteobacteria
Bradyrhizobium sp. 17-4 [BBEX]
1782
1866
+
Leu
GAG
[ENA]
¡û
>W1710500137
FMAE01000008
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
310489
310573
+
Leu
GAG
[ENA]
¡û
>W1710513070
FMZW01000047
Alphaproteobacteria
Bradyrhizobium brasilense R5 [FMZW]
1309
1225
-
Leu
GAG
[ENA]
¡û
>W1710516762
FNCU01000018
Alphaproteobacteria
Bradyrhizobium sp. Rc2d [FNCU]
105098
105014
-
Leu
GAG
[ENA]
¡û
>W1710536601
FNTH01000001
Alphaproteobacteria
Bradyrhizobium erythrophlei [FNTH]
1386728
1386644
-
Leu
GAG
[ENA]
¡û
>W1710571306
FOVU01000004
Alphaproteobacteria
Bradyrhizobium sp. Ghvi [FOVU]
497556
497640
+
Leu
GAG
[ENA]
¡û
>W1710578528
FPBQ01000018
Alphaproteobacteria
Bradyrhizobium arachidis [FPBQ]
126892
126808
-
Leu
GAG
[ENA]
¡û
>W1710659017
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
2516276
2516360
+
Leu
GAG
[ENA]
¡û
>W1710735589
LGHK01000095
Alphaproteobacteria
Bradyrhizobium sp. NAS96.2 [LGHK]
29955
30039
+
Leu
GAG
[ENA]
¡û
>W1710735615
LGHL01000005
Alphaproteobacteria
Bradyrhizobium sp. NAS80.1 [LGHL]
51292
51376
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK