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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.121782 (13 seq.)
>W1711010101
LQRA01000076
Bacillota
Paenibacillus elgii [LQRA]
1119
1199
+
Leu
CAA
[ENA]
¡û
>WENV170705743
LNAP01000168
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
69368
69287
-
Leu
CAA
[ENA]
¢þ
>W141462575
JFHX01000029
Bacillota
Paenibacillus ehimensis A2 [JFHX]
63776
63696
-
Leu
CAA
[ENA]
¡û
>W141754343
JNVM01000025
Bacillota
Paenibacillus tyrfis MSt1 [JNVM]
37376
37296
-
Leu
CAA
[ENA]
¡û
>W1910154655
BILX01000064
Bacillota
Paenibacillus ehimensis NBRC 15659 [BILX]
38720
38640
-
Leu
CAA
[ENA]
¡û
>W1910154825
BIMB01000056
Bacillota
Paenibacillus elgii NBRC 100335 [BIMB]
277
357
+
Leu
CAA
[ENA]
¡û
>W1910505761
FYEP01000043
Bacillota
Paenibacillus tyrfis B69 [FYEP]
37195
37115
-
Leu
CAA
[ENA]
¡û
>W1810402830
PYHP01000040
Bacillota
Paenibacillus elgii AC13 [PYHP]
39326
39246
-
Leu
CAA
[ENA]
¡û
>W11163535
AFHW01000124
Bacillota
Paenibacillus elgii B69 [AFHW]
45774
45694
-
Leu
CAA
[ENA]
¡û
>W1610543189
JTHN01000082
Bacillota
Paenibacillus sp. A3 [JTHN]
1640
1720
+
Leu
CAA
[ENA]
¡û
>W1610858621
LQRA01000076
Bacillota
Paenibacillus elgii [LQRA]
1119
1199
+
Leu
CAA
[ENA]
¡û
>W1710505524
FMTT01000026
Bacillota
Paenibacillus tianmuensis [FMTT]
80406
80326
-
Leu
CAA
[ENA]
¡û
>W1710646320
JTHN01000082
Bacillota
Paenibacillus sp. A3 [JTHN]
1640
1720
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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