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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.121895 (70 seq.)
>W1710882901
LMVE01000106
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
99848
99765
-
Leu
TAG
[ENA]
¡û
>W1711081251
LSSA01000389
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
439
357
-
Leu
TAG
[ENA]
¡û
>W1711116514
LUBZ01000002
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
150726
150643
-
Leu
TAG
[ENA]
¡û
>W1711261759
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
956852
956935
+
Leu
TAG
[ENA]
¡û
>W1711335596
MBQX01000085
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
37973
38056
+
Leu
TAG
[ENA]
¡û
>W1711335635
MBQY01000068
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
35401
35484
+
Leu
TAG
[ENA]
¡û
>W1711711297
MTAV01000012
Cyanobacteriota
Nostoc sp. T09 [MTAV]
43574
43656
+
Leu
TAG
[ENA]
¡û
>W1711711422
MTAX01000046
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
232774
232692
-
Leu
TAG
[ENA]
¡û
>W131058348
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
1851751
1851669
-
Leu
TAG
[ENA]
¡û
>W131089996
AOFE01000068
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
56715
56797
+
Leu
TAG
[ENA]
¡û
>w021685
AAVW01000006
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
1845
1931
+
Leu
TAG
[ENA]
¡û
>W141022901
AJWF01000009
Cyanobacteriota
Anabaena sp. PCC 7108 [AJWF]
238388
238471
+
Leu
TAG
[ENA]
¡û
>WENV181850247
OGWC01007914
[OGWC] freshwater metagenome; freshwater
341
258
-
Leu
TAG
[ENA]
¢þ
>WENV181855382
OGWL01013153
[OGWL] freshwater metagenome; freshwater
435
352
-
Leu
TAG
[ENA]
¢þ
>WENV171003082
NNBT01000246
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
10030
9948
-
Leu
TAG
[ENA]
¢þ
>WENV171003438
NNBU01000022
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
160530
160448
-
Leu
TAG
[ENA]
¢þ
>WENV171003790
NNBV01000817
[NNBV] plant metagenome; symbiotic tissue sample KVS11
1518
1600
+
Leu
TAG
[ENA]
¢þ
>C181004760
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
5393977
5394059
+
Leu
TAG
-
¡û
>C181043632
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
4443945
4443863
-
Leu
TAG
-
¡û
>C181078427
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
6782155
6782072
-
Leu
TAG
-
¡û
>C181105263
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
2791730
2791647
-
Leu
TAG
-
¡û
>C181137802
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
2468381
2468464
+
Leu
TAG
-
¡û
>C191083044
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
4619004
4619087
+
Leu
TAG
-
¡û
>W1910008376
BDGE01000017
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
2394
2312
-
Leu
TAG
[ENA]
¡û
>W1910020501
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
4695978
4696060
+
Leu
TAG
[ENA]
¡û
>W1910596179
LAGX01000009
Cyanobacteriota
Nostoc linckia z1 [LAGX]
102690
102607
-
Leu
TAG
[ENA]
¡û
>W1910596262
LAGY01000015
Cyanobacteriota
Nostoc linckia z2 [LAGY]
102497
102414
-
Leu
TAG
[ENA]
¡û
>W1910596363
LAGZ01000008
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
128549
128466
-
Leu
TAG
[ENA]
¡û
>W1910596447
LAHA01000010
Cyanobacteriota
Nostoc linckia z4 [LAHA]
102690
102607
-
Leu
TAG
[ENA]
¡û
>W1910596506
LAHB01000008
Cyanobacteriota
Nostoc linckia z6 [LAHB]
128583
128500
-
Leu
TAG
[ENA]
¡û
>W1910596585
LAHC01000026
Cyanobacteriota
Nostoc linckia z7 [LAHC]
31467
31550
+
Leu
TAG
[ENA]
¡û
>W1910596667
LAHD01000012
Cyanobacteriota
Nostoc linckia z8 [LAHD]
46573
46490
-
Leu
TAG
[ENA]
¡û
>W1910596763
LAHE01000031
Cyanobacteriota
Nostoc linckia z9 [LAHE]
42847
42764
-
Leu
TAG
[ENA]
¡û
>W1910596894
LAHF01000124
Cyanobacteriota
Nostoc linckia z13 [LAHF]
8552
8469
-
Leu
TAG
[ENA]
¡û
>W1910596924
LAHG01000021
Cyanobacteriota
Nostoc linckia z14 [LAHG]
42900
42817
-
Leu
TAG
[ENA]
¡û
>W1910597096
LAHI01000030
Cyanobacteriota
Nostoc linckia z16 [LAHI]
46549
46466
-
Leu
TAG
[ENA]
¡û
>W1910597185
LAHJ01000022
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
42826
42743
-
Leu
TAG
[ENA]
¡û
>W1910805267
MTPU01000027
Cyanobacteriota
Cylindrospermopsis raciborskii CENA302 [MTPU]
38150
38233
+
Leu
TAG
[ENA]
¡û
>W1910859294
NBYN01000056
Cyanobacteriota
Cylindrospermopsis raciborskii CENA303 [NBYN]
46567
46484
-
Leu
TAG
[ENA]
¡û
>W1910943169
NJHS01000010
Cyanobacteriota
Cylindrospermopsis raciborskii C07 [NJHS]
30924
31007
+
Leu
TAG
[ENA]
¡û
>W1910943199
NJHT01000004
Cyanobacteriota
Cylindrospermopsis raciborskii C04 [NJHT]
74342
74259
-
Leu
TAG
[ENA]
¡û
>W1910943237
NJHU01000006
Cyanobacteriota
Cylindrospermopsis raciborskii C03 [NJHU]
31172
31255
+
Leu
TAG
[ENA]
¡û
>W1910943299
NJHV01000260
Cyanobacteriota
Cylindrospermopsis raciborskii S14 [NJHV]
4294
4377
+
Leu
TAG
[ENA]
¡û
>W1910943328
NJHW01000037
Cyanobacteriota
Cylindrospermopsis raciborskii S10 [NJHW]
17484
17567
+
Leu
TAG
[ENA]
¡û
>W1910943391
NJHX01000390
Cyanobacteriota
Cylindrospermopsis raciborskii S07 [NJHX]
54928
55011
+
Leu
TAG
[ENA]
¡û
>W1910943416
NJHY01000052
Cyanobacteriota
Cylindrospermopsis raciborskii S06 [NJHY]
72347
72430
+
Leu
TAG
[ENA]
¡û
>W1910943457
NJHZ01000071
Cyanobacteriota
Cylindrospermopsis raciborskii S05 [NJHZ]
71325
71408
+
Leu
TAG
[ENA]
¡û
>W1910943491
NJIA01000030
Cyanobacteriota
Cylindrospermopsis raciborskii S01 [NJIA]
11913
11830
-
Leu
TAG
[ENA]
¡û
>W1911118740
NOLJ01000003
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
432365
432448
+
Leu
TAG
[ENA]
¡û
>W1911153638
NPIK01000002
Cyanobacteriota
Cylindrospermopsis raciborskii CYLP [NPIK]
789841
789924
+
Leu
TAG
[ENA]
¡û
>W1911153681
NPIL01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CYRF [NPIL]
896483
896566
+
Leu
TAG
[ENA]
¡û
>W1911244268
NSHF01000139
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
3531
3613
+
Leu
TAG
[ENA]
¡û
>W1810355675
PVMC01000075
Cyanobacteriota
Cylindrospermopsis raciborskii Cr2010 [PVMC]
103629
103712
+
Leu
TAG
[ENA]
¡û
>W10106043
ACYA01000073
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
71377
71460
+
Leu
TAG
[ENA]
¡û
>W10106049
ACYB01000011
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
26555
26638
+
Leu
TAG
[ENA]
¡û
>W11108366
ACYA01000073
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
71377
71460
+
Leu
TAG
[ENA]
¡û
>W11108372
ACYB01000011
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
26555
26638
+
Leu
TAG
[ENA]
¡û
>C161005338
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
4003701
4003783
+
Leu
TAG
[Ensembl]
¡û
>W1610084869
CDHJ01000128
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
209
126
-
Leu
TAG
[ENA]
¡û
>C131004825
CP003620
Cyanobacteriota
Crinalium epipsammum PCC 9333 [CP003620]
3706894
3706811
-
Leu
TAG
[Ensembl]
¡û
>C131004268
CP003552
Cyanobacteriota
Nostoc sp. PCC 7524 [CP003552]
4534551
4534632
+
Leu
TAG
[Ensembl]
¡û
>C131010297
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
4141269
4141351
+
Leu
TAG
[Ensembl]
¡û
>W1610744827
LMVE01000106
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
99848
99765
-
Leu
TAG
[ENA]
¡û
>W1610927756
LUBZ01000002
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
150726
150643
-
Leu
TAG
[ENA]
¡û
>W1610931017
LUFH01000597
Cyanobacteriota
Sphaerospermopsis aphanizomenoides BCCUSP55 [LUFH]
104
22
-
Leu
TAG
[ENA]
¡û
>W1610932115
LUHI01000024
Cyanobacteriota
Anabaena sp. CA = ATCC 33047 [LUHI]
66940
67021
+
Leu
TAG
[ENA]
¡û
>W1610979381
LWAJ01000058
Cyanobacteriota
Nodularia spumigena CENA596 [LWAJ]
19542
19460
-
Leu
TAG
[ENA]
¡û
>W1611023734
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
956852
956935
+
Leu
TAG
[ENA]
¡û
>W1710087977
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
3451051
3451133
+
Leu
TAG
[ENA]
¡û
>W1710089731
CDHJ01000128
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
209
126
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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