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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.121900 (45 seq.)
>W1711724378
MTQD01000005
Gammaproteobacteria
Pseudoalteromonas sp. EB27 [MTQD]
219678
219594
-
Leu
GAG
[ENA]
¡û
>C171097315
CP019628
Gammaproteobacteria
Pseudoalteromonas aliena EH1 [CP019628]
4473676
4473592
-
Leu
GAG
-
¡û
>W131051915
AMYA01000032
Gammaproteobacteria
Pseudoalteromonas sp. Bsw20308 [AMYA]
31372
31288
-
Leu
GAG
[ENA]
¡û
>C016421
CR954246
Gammaproteobacteria
Pseudoalteromonas translucida TAC125 [CR954246, CR954247]
901280
901364
+
Leu
GAG
[Ensembl]
¡û
>W141086657
AUTJ01000212
Gammaproteobacteria
Pseudoalteromonas sp. TB13 TB13 [AUTJ]
13062
13146
+
Leu
GAG
[ENA]
¡û
>W141086837
AUTL01000266
Gammaproteobacteria
Pseudoalteromonas sp. TAE79 TAE79 [AUTL]
33277
33193
-
Leu
GAG
[ENA]
¡û
>W141086878
AUTM01000128
Gammaproteobacteria
Pseudoalteromonas sp. TAE80 TAE80 [AUTM]
33277
33193
-
Leu
GAG
[ENA]
¡û
>W141086952
AUTN01000031
Gammaproteobacteria
Pseudoalteromonas sp. TAE56 TAE56 [AUTN]
9354
9438
+
Leu
GAG
[ENA]
¡û
>W141087191
AUTP01000280
Gammaproteobacteria
Pseudoalteromonas sp. TAB23 TAB23 [AUTP]
2359
2443
+
Leu
GAG
[ENA]
¡û
>W141087223
AUTQ01000045
Gammaproteobacteria
Pseudoalteromonas sp. TB64 TB64 [AUTQ]
1486
1402
-
Leu
GAG
[ENA]
¡û
>W141087375
AUTR01000040
Gammaproteobacteria
Pseudoalteromonas sp. S8-8 [AUTR]
15868
15952
+
Leu
GAG
[ENA]
¡û
>W141087499
AUTS01000042
Gammaproteobacteria
Pseudoalteromonas sp. S8-38 [AUTS]
15868
15952
+
Leu
GAG
[ENA]
¡û
>WENV182554655
OJCW01000515
[OJCW] seawater metagenome; Sea water
6186
6270
+
Leu
GAG
[ENA]
¢þ
>WENV182557313
OJDI01006497
[OJDI] seawater metagenome; Sea water
443
359
-
Leu
GAG
[ENA]
¢þ
>WENV182559041
OJDO01000141
[OJDO] seawater metagenome; Sea water
516
600
+
Leu
GAG
[ENA]
¢þ
>WENV182564716
OJEF01004116
[OJEF] seawater metagenome; Sea water
106
22
-
Leu
GAG
[ENA]
¢þ
>WENV182565445
OJEH01005448
[OJEH] seawater metagenome; Sea water
1983
1899
-
Leu
GAG
[ENA]
¢þ
>WENV182565855
OJEI01000346
[OJEI] seawater metagenome; Sea water
8369
8453
+
Leu
GAG
[ENA]
¢þ
>WENV182575146
OJFU01000204
[OJFU] seawater metagenome; Sea water
6231
6315
+
Leu
GAG
[ENA]
¢þ
>WENV183057636
OLHM01000080
[OLHM] seawater metagenome; Sea water
33442
33526
+
Leu
GAG
[ENA]
¢þ
>WENV183057955
OLHN01000095
[OLHN] seawater metagenome; Sea water
17253
17337
+
Leu
GAG
[ENA]
¢þ
>WENV170672747
LAZR01001401
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
3444
3528
+
Leu
GAG
[ENA]
¢þ
>C181010120
CP011025
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [CP011025, CP011026]
1134695
1134779
+
Leu
GAG
-
¡û
>C181010543
CP011036
Gammaproteobacteria
Pseudoalteromonas nigrifaciens KMM 661 [CP011036, CP011037]
965310
965394
+
Leu
GAG
-
¡û
>C181012540
CP012737
Gammaproteobacteria
Pseudoalteromonas sp. 1_2015MBL_MicDiv [CP012737, CP012738]
1085451
1085535
+
Leu
GAG
-
¡û
>C191179276
CP040558
Gammaproteobacteria
Pseudoalteromonas distincta 16-SW-7 [CP040558]
819627
819711
+
Leu
GAG
-
¡û
>W141621790
JJNY01000055
Gammaproteobacteria
Pseudoalteromonas sp. S3431 [JJNY]
8388
8304
-
Leu
GAG
[ENA]
¡û
>W141621849
JJNZ01000008
Gammaproteobacteria
Pseudoalteromonas fuliginea citrea [JJNZ]
173269
173185
-
Leu
GAG
[ENA]
¡û
>W1910377967
FUKV01000022
Gammaproteobacteria
Pseudoalteromonas sp. JB197 [FUKV]
1249
1165
-
Leu
GAG
[ENA]
¡û
>W1911203730
NRGZ01000001
Gammaproteobacteria
Pseudoalteromonas sp. JB197 [NRGZ]
1871731
1871647
-
Leu
GAG
[ENA]
¡û
>W1810155611
PJAV01000080
Gammaproteobacteria
Pseudoalteromonas sp. 78C3 [PJAV]
9278
9362
+
Leu
GAG
[ENA]
¡û
>W1810156577
PJBK01000018
Gammaproteobacteria
Pseudoalteromonas sp. GutCa3 [PJBK]
26576
26492
-
Leu
GAG
[ENA]
¡û
>W1810157004
PJBQ01000041
Gammaproteobacteria
Pseudoalteromonas arctica MelAa3 [PJBQ]
26576
26492
-
Leu
GAG
[ENA]
¡û
>W1810157109
PJBR01000056
Gammaproteobacteria
Pseudoalteromonas sp. MelDa3 [PJBR]
17741
17825
+
Leu
GAG
[ENA]
¡û
>W1511399016
JTDZ01000001
Gammaproteobacteria
Pseudoalteromonas elyakovii NCIMB 2033 = ATCC BAA-314 [JTDZ]
12890
12806
-
Leu
GAG
[ENA]
¡û
>W11121996
ADOP01000082
Gammaproteobacteria
Pseudoalteromonas distincta ANT/505 [ADOP]
2889
2973
+
Leu
GAG
[ENA]
¡û
>W1511479529
JWIG01000001
Gammaproteobacteria
Pseudoalteromonas distincta ATCC 700518 [JWIG]
141148
141064
-
Leu
GAG
[ENA]
¡û
>W1511518615
JXYD01000055
Gammaproteobacteria
Pseudoalteromonas fuliginea S2292 [JXYD]
27538
27622
+
Leu
GAG
[ENA]
¡û
>C161031154
CP011034
Gammaproteobacteria
Pseudoalteromonas translucida KMM 520 [CP011034, CP011035]
943566
943650
+
Leu
GAG
[Ensembl]
¡û
>C161051994
CP013138
Gammaproteobacteria
Pseudoalteromonas sp. Bsw20308 BSW20308 [CP013138]
2965093
2965009
-
Leu
GAG
-
¡û
>W121024746
AHBY01000009
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [AHBY]
42802
42718
-
Leu
GAG
[ENA]
¡û
>W121123071
BADT01000248
Gammaproteobacteria
Pseudoalteromonas sp. BSi20652 [BADT]
29784
29868
+
Leu
GAG
[ENA]
¡û
>W121123196
BADV01000097
Gammaproteobacteria
Pseudoalteromonas sp. BSi20429 [BADV]
18282
18366
+
Leu
GAG
[ENA]
¡û
>W121123365
BADY01000084
Gammaproteobacteria
Pseudoalteromonas sp. BSi20495 [BADY]
1938
1854
-
Leu
GAG
[ENA]
¡û
>WENV078397
AAGA01006558
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
593
679
+
Leu
GAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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