This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.121913 (37 seq.)
>W1711055300
LRUQ01000089
Campylobacterota
Aliarcobacter cryaerophilus [LRUQ]
38831
38747
-
Leu
GAG
[ENA]
¡û
>W1711055322
LRUR01000051
Campylobacterota
Aliarcobacter cryaerophilus [LRUR]
25438
25522
+
Leu
GAG
[ENA]
¡û
>W1711055349
LRUS01000071
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
5287
5203
-
Leu
GAG
[ENA]
¡û
>W1711055375
LRUT01000057
Campylobacterota
Aliarcobacter cryaerophilus [LRUT]
496
412
-
Leu
GAG
[ENA]
¡û
>W1711055410
LRUU01000069
Campylobacterota
Aliarcobacter cryaerophilus [LRUU]
24049
24133
+
Leu
GAG
[ENA]
¡û
>W1711055440
LRUV01000043
Campylobacterota
Aliarcobacter cryaerophilus [LRUV]
12413
12497
+
Leu
GAG
[ENA]
¡û
>W1711055468
LRUW01000039
Campylobacterota
Aliarcobacter skirrowii [LRUW]
45971
46055
+
Leu
GAG
[ENA]
¡û
>W1711055495
LRUX01000025
Campylobacterota
Aliarcobacter skirrowii [LRUX]
49987
50071
+
Leu
GAG
[ENA]
¡û
>W1711055530
LRUY01000070
Campylobacterota
Aliarcobacter skirrowii [LRUY]
42499
42583
+
Leu
GAG
[ENA]
¡û
>W1711055562
LRUZ01000034
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
76978
77062
+
Leu
GAG
[ENA]
¡û
>WENV180284123
OBID01016276
[OBID] metagenome; sludge
1542
1458
-
Leu
GAG
[ENA]
¢þ
>WENV170555100
CXWK01095533
[CXWK] wastewater metagenome; activated sludge
112
196
+
Leu
GAG
[ENA]
¢þ
>WENV170684313
LFRM01031805
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
211
295
+
Leu
GAG
[ENA]
¢þ
>C181199792
CP031367
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [CP031367]
1143375
1143459
+
Leu
GAG
-
¡û
>C191084534
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
870936
871020
+
Leu
GAG
-
¡û
>C191095059
CP032823
Campylobacterota
Aliarcobacter cryaerophilus ATCC 43158 [CP032823]
833635
833551
-
Leu
GAG
-
¡û
>C191095108
CP032825
Campylobacterota
Aliarcobacter cryaerophilus D2610 [CP032825]
875063
874979
-
Leu
GAG
-
¡û
>C191122815
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
802612
802696
+
Leu
GAG
-
¡û
>W1911424350
NXGC01000006
Campylobacterota
Aliarcobacter cryaerophilus LMG 29976 [NXGC]
49613
49529
-
Leu
GAG
[ENA]
¡û
>W1911424394
NXGD01000008
Campylobacterota
Aliarcobacter cryaerophilus LMG 10229 [NXGD]
77435
77351
-
Leu
GAG
[ENA]
¡û
>W1911424532
NXGH01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 9871 [NXGH]
105037
105121
+
Leu
GAG
[ENA]
¡û
>W1911424601
NXGI01000017
Campylobacterota
Aliarcobacter cryaerophilus LMG 9065 [NXGI]
119801
119885
+
Leu
GAG
[ENA]
¡û
>W1911424641
NXGJ01000003
Campylobacterota
Aliarcobacter cryaerophilus LMG 9861 [NXGJ]
37979
37895
-
Leu
GAG
[ENA]
¡û
>W1911424674
NXGK01000011
Campylobacterota
Aliarcobacter cryaerophilus LMG 24291 [NXGK]
11634
11718
+
Leu
GAG
[ENA]
¡û
>W1911426156
NXIC01000005
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
92170
92254
+
Leu
GAG
[ENA]
¡û
>W1911576092
PDJT01000010
Campylobacterota
Aliarcobacter skirrowii F28 [PDJT]
16342
16258
-
Leu
GAG
[ENA]
¡û
>W1911576559
PDKD01000016
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [PDKD]
32701
32785
+
Leu
GAG
[ENA]
¡û
>W1610896346
LRUQ01000089
Campylobacterota
Aliarcobacter cryaerophilus [LRUQ]
38831
38747
-
Leu
GAG
[ENA]
¡û
>W1610896368
LRUR01000051
Campylobacterota
Aliarcobacter cryaerophilus [LRUR]
25438
25522
+
Leu
GAG
[ENA]
¡û
>W1610896395
LRUS01000071
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
5287
5203
-
Leu
GAG
[ENA]
¡û
>W1610896421
LRUT01000057
Campylobacterota
Aliarcobacter cryaerophilus [LRUT]
496
412
-
Leu
GAG
[ENA]
¡û
>W1610896456
LRUU01000069
Campylobacterota
Aliarcobacter cryaerophilus [LRUU]
24049
24133
+
Leu
GAG
[ENA]
¡û
>W1610896486
LRUV01000043
Campylobacterota
Aliarcobacter cryaerophilus [LRUV]
12413
12497
+
Leu
GAG
[ENA]
¡û
>W1610896514
LRUW01000039
Campylobacterota
Aliarcobacter skirrowii [LRUW]
45971
46055
+
Leu
GAG
[ENA]
¡û
>W1610896541
LRUX01000025
Campylobacterota
Aliarcobacter skirrowii [LRUX]
49987
50071
+
Leu
GAG
[ENA]
¡û
>W1610896576
LRUY01000070
Campylobacterota
Aliarcobacter skirrowii [LRUY]
42499
42583
+
Leu
GAG
[ENA]
¡û
>W1610896608
LRUZ01000034
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
76978
77062
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK