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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12212 (31 seq.)
>C171057864
CP017150
Actinomycetota
Brevibacterium aurantiacum SMQ-1335 [CP017150]
3720014
3719925
-
Ser
GCT
-
¡û
>w005545
AAGP01000008
Actinomycetota
Brevibacterium aurantiacum BL2 [AAGP]
69982
69889
-
Ser
GCT
[ENA]
¡û
>WENV183635986
OOJA01012479
[OOJA] human gut metagenome; Lung tissue
189
100
-
Ser
GCT
[ENA]
¢þ
>C191031867
CP025330
Actinomycetota
Brevibacterium aurantiacum SMQ-1417 [CP025330]
3947308
3947219
-
Ser
GCT
-
¡û
>C191031915
CP025331
Actinomycetota
Brevibacterium aurantiacum SMQ-1418 [CP025331]
3622571
3622482
-
Ser
GCT
-
¡û
>C191031963
CP025332
Actinomycetota
Brevibacterium aurantiacum SMQ-1421 [CP025332]
3529712
3529623
-
Ser
GCT
-
¡û
>C191032010
CP025333
Actinomycetota
Brevibacterium aurantiacum SMQ-1419 [CP025333]
3557486
3557397
-
Ser
GCT
-
¡û
>C191032058
CP025334
Actinomycetota
Brevibacterium aurantiacum SMQ-1420 [CP025334]
3807506
3807417
-
Ser
GCT
-
¡û
>W1910181626
BJME01000006
Actinomycetota
Brevibacterium aurantiacum NBRC 12171 [BJME]
80708
80797
+
Ser
GCT
[ENA]
¡û
>W1910500071
FXYZ01000001
Actinomycetota
Brevibacterium aurantiacum [FXYZ]
257203
257114
-
Ser
GCT
[ENA]
¡û
>W1910500177
FXZB01000004
Actinomycetota
Brevibacterium aurantiacum ATCC 9175 [FXZB]
93924
93835
-
Ser
GCT
[ENA]
¡û
>W1910500212
FXZC01000001
Actinomycetota
Brevibacterium casei CIP 102111 [FXZC]
519652
519741
+
Ser
GCT
[ENA]
¡û
>W1910500298
FXZD01000009
Actinomycetota
Brevibacterium antiquum CNRZ 918 [FXZD]
55055
54966
-
Ser
GCT
[ENA]
¡û
>W1910500347
FXZE01000028
Actinomycetota
Brevibacterium antiquum P10 [FXZE]
18491
18402
-
Ser
GCT
[ENA]
¡û
>W1910500432
FXZG01000013
Actinomycetota
Brevibacterium aurantiacum CNRZ 920 [FXZG]
68419
68508
+
Ser
GCT
[ENA]
¡û
>W1910500475
FXZH01000016
Actinomycetota
Brevibacterium sp. 239c [FXZH]
860
771
-
Ser
GCT
[ENA]
¡û
>W1910500511
FXZI01000002
Actinomycetota
Brevibacterium aurantiacum [FXZI]
425363
425274
-
Ser
GCT
[ENA]
¡û
>W1910871236
NCWY01000009
Actinomycetota
Brevibacterium casei OG2 [NCWY]
91910
91821
-
Ser
GCT
[ENA]
¡û
>W1911203117
NRGO01000004
Actinomycetota
Brevibacterium aurantiacum 900_6 [NRGO]
405247
405158
-
Ser
GCT
[ENA]
¡û
>W1911203189
NRGP01000011
Actinomycetota
Brevibacterium aurantiacum 947_7 [NRGP]
69965
70054
+
Ser
GCT
[ENA]
¡û
>W1911203234
NRGQ01000013
Actinomycetota
Brevibacterium aurantiacum 962_8 [NRGQ]
87531
87620
+
Ser
GCT
[ENA]
¡û
>W1911203623
NRGX01000001
Actinomycetota
Brevibacterium aurantiacum JB5 [NRGX]
1259930
1259841
-
Ser
GCT
[ENA]
¡û
>W1911203804
NRHA01000011
Actinomycetota
Brevibacterium aurantiacum 738_8 [NRHA]
80615
80704
+
Ser
GCT
[ENA]
¡û
>W1911203857
NRHB01000009
Actinomycetota
Brevibacterium aurantiacum 341_13 [NRHB]
69618
69707
+
Ser
GCT
[ENA]
¡û
>W1810721413
QNRZ01000014
Actinomycetota
Brevibacterium sanguinis 2b_TX [QNRZ]
188
99
-
Ser
GCT
[ENA]
¡û
>W1810721508
QNSB01000014
Actinomycetota
Brevibacterium celere 3b_TX [QNSB]
188
99
-
Ser
GCT
[ENA]
¡û
>W1810756560
QPGC01000054
Actinomycetota
Brevibacterium aurantiacum 862_7 [QPGC]
39567
39656
+
Ser
GCT
[ENA]
¡û
>W1810756570
QPGD01000001
Actinomycetota
Brevibacterium aurantiacum 876_7 [QPGD]
93076
92987
-
Ser
GCT
[ENA]
¡û
>W1810756617
QPGE01000001
Actinomycetota
Brevibacterium aurantiacum 908_7 [QPGE]
115819
115908
+
Ser
GCT
[ENA]
¡û
>W1610050887
BBGH01000215
Actinomycetota
Brevibacterium sp. JCM 18882 [BBGH]
3381
3292
-
Ser
GCT
[ENA]
¡û
>W1710047286
BBGH01000215
Actinomycetota
Brevibacterium sp. JCM 18882 [BBGH]
3381
3292
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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