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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.122202 (124 seq.)
>W1710852881
LLWC01000022
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
165676
165592
-
Tyr
GTA
[ENA]
¡û
>W1710852882
LLWC01000022
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
115386
115302
-
Tyr
GTA
[ENA]
¡û
>W1710852922
LLWE01000018
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
3343
3427
+
Tyr
GTA
[ENA]
¡û
>W1710852952
LLWE01000025
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
17247
17163
-
Tyr
GTA
[ENA]
¡û
>W1710859308
LMCB01000004
Alphaproteobacteria
Pseudovibrio axinellae [LMCB]
121419
121335
-
Tyr
GTA
[ENA]
¡û
>W1710859309
LMCB01000004
Alphaproteobacteria
Pseudovibrio axinellae [LMCB]
67590
67506
-
Tyr
GTA
[ENA]
¡û
>W1710859399
LMCC01000017
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
216432
216348
-
Tyr
GTA
[ENA]
¡û
>W1710859400
LMCC01000017
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
140044
139960
-
Tyr
GTA
[ENA]
¡û
>W1710859454
LMCD01000022
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
197706
197622
-
Tyr
GTA
[ENA]
¡û
>W1710859455
LMCD01000022
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
140275
140191
-
Tyr
GTA
[ENA]
¡û
>W1710859516
LMCE01000094
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
142522
142438
-
Tyr
GTA
[ENA]
¡û
>W1710859521
LMCE01000095
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
103909
103825
-
Tyr
GTA
[ENA]
¡û
>W1710859578
LMCF01000212
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
51897
51813
-
Tyr
GTA
[ENA]
¡û
>W1710859583
LMCF01000215
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
24242
24158
-
Tyr
GTA
[ENA]
¡û
>W1710859638
LMCG01000077
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
63632
63548
-
Tyr
GTA
[ENA]
¡û
>W1710859643
LMCG01000079
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
50294
50210
-
Tyr
GTA
[ENA]
¡û
>W1710859698
LMCH01000057
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
123112
123028
-
Tyr
GTA
[ENA]
¡û
>W1710859699
LMCH01000057
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
63631
63547
-
Tyr
GTA
[ENA]
¡û
>W1710859738
LMCI01000034
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
16771
16855
+
Tyr
GTA
[ENA]
¡û
>W1710859739
LMCI01000034
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
77064
77148
+
Tyr
GTA
[ENA]
¡û
>W1710859816
LMCJ01000053
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
76751
76667
-
Tyr
GTA
[ENA]
¡û
>W1710859817
LMCJ01000053
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
19264
19180
-
Tyr
GTA
[ENA]
¡û
>W1710859864
LMCK01000090
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
56401
56317
-
Tyr
GTA
[ENA]
¡û
>W1710859867
LMCK01000103
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
2722
2806
+
Tyr
GTA
[ENA]
¡û
>W1711167006
LVVZ01000005
Alphaproteobacteria
Pseudovibrio exalbescens [LVVZ]
44315
44231
-
Tyr
GTA
[ENA]
¡û
>W1711167007
LVVZ01000005
Alphaproteobacteria
Pseudovibrio exalbescens [LVVZ]
1089
1005
-
Tyr
GTA
[ENA]
¡û
>W1711424962
MIEL01000015
Alphaproteobacteria
Pseudovibrio brasiliensis Ab134 [MIEL]
637
553
-
Tyr
GTA
[ENA]
¡û
>W1711424984
MIEL01000038
Alphaproteobacteria
Pseudovibrio brasiliensis Ab134 [MIEL]
54172
54088
-
Tyr
GTA
[ENA]
¡û
>W1711475575
MJUX01000008
Alphaproteobacteria
Acuticoccus yangtzensis [MJUX]
161613
161529
-
Tyr
GTA
[ENA]
¡û
>W1711510436
MLAX01000003
Alphaproteobacteria
Alphaproteobacteria bacterium AO1-B [MLAX]
728753
728837
+
Tyr
GTA
[ENA]
¡û
>W1711827040
MXQE01000018
Alphaproteobacteria
Labrenzia sp. CP4 [MXQE]
18704
18620
-
Tyr
GTA
[ENA]
¡û
>C171097456
CP019630
Alphaproteobacteria
Roseibium aggregatum RMAR6-6 [CP019630]
5274526
5274610
+
Tyr
GTA
-
¡û
>W131229309
AUGS01000001
Alphaproteobacteria
Pseudovibrio exalbescens DSM 16456 [AUGS]
487147
487231
+
Tyr
GTA
[ENA]
¡û
>W131229310
AUGS01000001
Alphaproteobacteria
Pseudovibrio exalbescens DSM 16456 [AUGS]
530373
530457
+
Tyr
GTA
[ENA]
¡û
>w020444
AAUW01000012
Alphaproteobacteria
Roseibium aggregatum IAM 12614 [AAUW]
134117
134031
-
Tyr
GTA
[ENA]
¡û
>W141152636
AXBY01000023
Alphaproteobacteria
Labrenzia sp. C1B10 [AXBY]
849629
849713
+
Tyr
GTA
[ENA]
¡û
>W141152933
AXCE01000012
Alphaproteobacteria
Labrenzia sp. C1B70 [AXCE]
381
297
-
Tyr
GTA
[ENA]
¡û
>W141200764
AYYG01000026
Alphaproteobacteria
Labrenzia sp. DG1229 [AYYG]
5492
5576
+
Tyr
GTA
[ENA]
¡û
>WENV170014600
AYRH01031973
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
86
2
-
Tyr
GTA
[ENA]
¢þ
>WENV170728562
LULE01045423
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
205
121
-
Tyr
GTA
[ENA]
¢þ
>WENV170739868
LULQ01023187
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
83
1
-
Tyr
GTA
[ENA]
¢þ
>WENV170840163
MDSZ01199093
[MDSZ] marine metagenome; seawater
459
375
-
Tyr
GTA
[ENA]
¢þ
>WENV170962944
MRWF01031326
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
91160
91076
-
Tyr
GTA
[ENA]
¢þ
>WENV170964567
MRWG01019472
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
2963
3047
+
Tyr
GTA
[ENA]
¢þ
>W09112041
ABXL01000046
Alphaproteobacteria
Pseudovibrio sp. JE062 [ABXL]
429071
429155
+
Tyr
GTA
[ENA]
¡û
>W09112042
ABXL01000046
Alphaproteobacteria
Pseudovibrio sp. JE062 [ABXL]
493284
493368
+
Tyr
GTA
[ENA]
¡û
>W09118251
ACCU01000011
Alphaproteobacteria
Roseibium alexandrii DFL-11 [ACCU]
81526
81442
-
Tyr
GTA
[ENA]
¡û
>C181067740
CP022529
Alphaproteobacteria
Labrenzia sp. VG12 [CP022529]
1734221
1734137
-
Tyr
GTA
-
¡û
>W1910285139
FREW01000003
Alphaproteobacteria
Labrenzia sp. Alg231-36 [FREW]
844681
844765
+
Tyr
GTA
[ENA]
¡û
>W1910285183
FREX01000002
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
637386
637470
+
Tyr
GTA
[ENA]
¡û
>W1910285184
FREX01000002
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
723849
723933
+
Tyr
GTA
[ENA]
¡û
>W1910989662
NKQT01000001
Alphaproteobacteria
Pseudovibrio exalbescens COD 22 [NKQT]
204752
204668
-
Tyr
GTA
[ENA]
¡û
>W1910989663
NKQT01000001
Alphaproteobacteria
Pseudovibrio exalbescens COD 22 [NKQT]
125248
125164
-
Tyr
GTA
[ENA]
¡û
>W1911148427
NPEV01000048
Alphaproteobacteria
Rhodobium orientis DSM 11290 [NPEV]
551
467
-
Tyr
GTA
[ENA]
¡û
>W1911532381
OGUZ01000003
Alphaproteobacteria
Labrenzia sp. EL143 [OGUZ]
680
596
-
Tyr
GTA
[ENA]
¡û
>W1911538994
OMPG01000022
Alphaproteobacteria
Pseudovibrio ascidiaceicola AU243 [OMPG]
217574
217490
-
Tyr
GTA
[ENA]
¡û
>W1911538995
OMPG01000022
Alphaproteobacteria
Pseudovibrio ascidiaceicola AU243 [OMPG]
142643
142559
-
Tyr
GTA
[ENA]
¡û
>W1810232536
PPCN01000004
Alphaproteobacteria
Roseibium marinum DSM 17023 [PPCN]
140710
140626
-
Tyr
GTA
[ENA]
¡û
>W1810532677
QCYM01000036
Alphaproteobacteria
Labrenzia sp. 011 [QCYM]
15652
15736
+
Tyr
GTA
[ENA]
¡û
>W1810624932
QHHQ01000001
Alphaproteobacteria
Acuticoccus sediminis PTG4-2 [QHHQ]
189839
189755
-
Tyr
GTA
[ENA]
¡û
>W11135884
AEFL01000082
Alphaproteobacteria
Roseibium sp. TrichSKD4 [AEFL]
63005
63089
+
Tyr
GTA
[ENA]
¡û
>C121006695
CP003147
Alphaproteobacteria
Pseudovibrio sp. FO-BEG1 [CP003147]
4304612
4304528
-
Tyr
GTA
[Ensembl]
¡û
>C121006696
CP003147
Alphaproteobacteria
Pseudovibrio sp. FO-BEG1 [CP003147]
4223719
4223635
-
Tyr
GTA
[Ensembl]
¡û
>C161037911
CP011927
Alphaproteobacteria
Labrenzia sp. CP4 [CP011927]
2704559
2704643
+
Tyr
GTA
-
¡û
>W1610042597
BAXV01000020
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
34921
35005
+
Tyr
GTA
[ENA]
¡û
>W1610042598
BAXV01000020
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
59946
60030
+
Tyr
GTA
[ENA]
¡û
>W1610042851
BAZK01000002
Alphaproteobacteria
Pseudovibrio denitrificans JCM 12308 [BAZK]
297399
297483
+
Tyr
GTA
[ENA]
¡û
>W1610042889
BAZK01000049
Alphaproteobacteria
Pseudovibrio denitrificans JCM 12308 [BAZK]
447
363
-
Tyr
GTA
[ENA]
¡û
>W1610091984
CXST01000001
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
1229164
1229080
-
Tyr
GTA
[ENA]
¡û
>W1610092066
CXTY01000001
Alphaproteobacteria
Roseibium album alba [CXTY]
317644
317728
+
Tyr
GTA
[ENA]
¡û
>W1610092119
CXWA01000003
Alphaproteobacteria
Roseibium album alba [CXWA]
157922
157838
-
Tyr
GTA
[ENA]
¡û
>W1610092156
CXWC01000001
Alphaproteobacteria
Roseibium album alba [CXWC]
157922
157838
-
Tyr
GTA
[ENA]
¡û
>W1610092211
CXWD01000006
Alphaproteobacteria
Roseibium alexandrii [CXWD]
13762
13846
+
Tyr
GTA
[ENA]
¡û
>W1610092257
CXWE01000004
Alphaproteobacteria
Roseibium album alba [CXWE]
157922
157838
-
Tyr
GTA
[ENA]
¡û
>W1610540304
JSEP01000020
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
101789
101873
+
Tyr
GTA
[ENA]
¡û
>W1610585592
LCWX01000122
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
49261
49177
-
Tyr
GTA
[ENA]
¡û
>W1610585601
LCWX01000148
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
9624
9708
+
Tyr
GTA
[ENA]
¡û
>W1610716020
LLWC01000022
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
165676
165592
-
Tyr
GTA
[ENA]
¡û
>W1610716021
LLWC01000022
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
115386
115302
-
Tyr
GTA
[ENA]
¡û
>W1610716061
LLWE01000018
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
3343
3427
+
Tyr
GTA
[ENA]
¡û
>W1610716091
LLWE01000025
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
17247
17163
-
Tyr
GTA
[ENA]
¡û
>W1610721654
LMCB01000004
Alphaproteobacteria
Pseudovibrio axinellae [LMCB]
121419
121335
-
Tyr
GTA
[ENA]
¡û
>W1610721655
LMCB01000004
Alphaproteobacteria
Pseudovibrio axinellae [LMCB]
67590
67506
-
Tyr
GTA
[ENA]
¡û
>W1610721745
LMCC01000017
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
216432
216348
-
Tyr
GTA
[ENA]
¡û
>W1610721746
LMCC01000017
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
140044
139960
-
Tyr
GTA
[ENA]
¡û
>W1610721800
LMCD01000022
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
197706
197622
-
Tyr
GTA
[ENA]
¡û
>W1610721801
LMCD01000022
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
140275
140191
-
Tyr
GTA
[ENA]
¡û
>W1610721862
LMCE01000094
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
142522
142438
-
Tyr
GTA
[ENA]
¡û
>W1610721867
LMCE01000095
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
103909
103825
-
Tyr
GTA
[ENA]
¡û
>W1610721924
LMCF01000212
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
51897
51813
-
Tyr
GTA
[ENA]
¡û
>W1610721929
LMCF01000215
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
24242
24158
-
Tyr
GTA
[ENA]
¡û
>W1610721984
LMCG01000077
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
63632
63548
-
Tyr
GTA
[ENA]
¡û
>W1610721989
LMCG01000079
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
50294
50210
-
Tyr
GTA
[ENA]
¡û
>W1610722044
LMCH01000057
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
123112
123028
-
Tyr
GTA
[ENA]
¡û
>W1610722045
LMCH01000057
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
63631
63547
-
Tyr
GTA
[ENA]
¡û
>W1610722084
LMCI01000034
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
16771
16855
+
Tyr
GTA
[ENA]
¡û
>W1610722085
LMCI01000034
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
77064
77148
+
Tyr
GTA
[ENA]
¡û
>W1610722162
LMCJ01000053
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
76751
76667
-
Tyr
GTA
[ENA]
¡û
>W1610722163
LMCJ01000053
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
19264
19180
-
Tyr
GTA
[ENA]
¡û
>W1610722210
LMCK01000090
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
56401
56317
-
Tyr
GTA
[ENA]
¡û
>W1610722213
LMCK01000103
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
2722
2806
+
Tyr
GTA
[ENA]
¡û
>W1710015715
AQRB01000004
Alphaproteobacteria
Stappia sp. 22II-S9-Z10 [AQRB]
86886
86970
+
Tyr
GTA
[ENA]
¡û
>W1710039691
BAXV01000020
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
34921
35005
+
Tyr
GTA
[ENA]
¡û
>W1710039692
BAXV01000020
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
59946
60030
+
Tyr
GTA
[ENA]
¡û
>W1710040011
BAZK01000002
Alphaproteobacteria
Pseudovibrio denitrificans JCM 12308 [BAZK]
297399
297483
+
Tyr
GTA
[ENA]
¡û
>W1710040049
BAZK01000049
Alphaproteobacteria
Pseudovibrio denitrificans JCM 12308 [BAZK]
447
363
-
Tyr
GTA
[ENA]
¡û
>W1710095341
CXST01000001
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
1229164
1229080
-
Tyr
GTA
[ENA]
¡û
>W1710095423
CXTY01000001
Alphaproteobacteria
Roseibium album alba [CXTY]
317644
317728
+
Tyr
GTA
[ENA]
¡û
>W1710095476
CXWA01000003
Alphaproteobacteria
Roseibium album alba [CXWA]
157922
157838
-
Tyr
GTA
[ENA]
¡û
>W1710095513
CXWC01000001
Alphaproteobacteria
Roseibium album alba [CXWC]
157922
157838
-
Tyr
GTA
[ENA]
¡û
>W1710095568
CXWD01000006
Alphaproteobacteria
Roseibium alexandrii [CXWD]
13762
13846
+
Tyr
GTA
[ENA]
¡û
>W1710095614
CXWE01000004
Alphaproteobacteria
Roseibium album alba [CXWE]
157922
157838
-
Tyr
GTA
[ENA]
¡û
>W1710527530
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
4343821
4343905
+
Tyr
GTA
[ENA]
¡û
>W1710527531
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
4379672
4379756
+
Tyr
GTA
[ENA]
¡û
>W1710550700
FOFM01000005
Alphaproteobacteria
Pseudovibrio axinellae [FOFM]
140855
140771
-
Tyr
GTA
[ENA]
¡û
>W1710550701
FOFM01000005
Alphaproteobacteria
Pseudovibrio axinellae [FOFM]
87026
86942
-
Tyr
GTA
[ENA]
¡û
>W1710567044
FOSK01000009
Alphaproteobacteria
Pseudovibrio ascidiaceicola [FOSK]
200173
200257
+
Tyr
GTA
[ENA]
¡û
>W1710567059
FOSK01000026
Alphaproteobacteria
Pseudovibrio ascidiaceicola [FOSK]
18785
18869
+
Tyr
GTA
[ENA]
¡û
>W1710577866
FPBD01000002
Alphaproteobacteria
Pseudovibrio denitrificans [FPBD]
657523
657607
+
Tyr
GTA
[ENA]
¡û
>W1710577867
FPBD01000002
Alphaproteobacteria
Pseudovibrio denitrificans [FPBD]
756033
756117
+
Tyr
GTA
[ENA]
¡û
>W1710643325
JSEP01000020
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
101789
101873
+
Tyr
GTA
[ENA]
¡û
>W1710660279
JXMT01000140
Alphaproteobacteria
Roseibium aggregatum aggregata [JXMT]
4295
4379
+
Tyr
GTA
[ENA]
¡û
>W1710704783
LCWX01000122
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
49261
49177
-
Tyr
GTA
[ENA]
¡û
>W1710704792
LCWX01000148
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
9624
9708
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
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Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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