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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.122324 (28 seq.)
>C015150
CP000103
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 [CP000103]
1257731
1257815
+
Leu
GAG
[Ensembl]
¡û
>WENV170712377
LNFM01012655
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8624
8540
-
Leu
GAG
[ENA]
¢þ
>WENV170713193
LNFM01025944
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
872
788
-
Leu
GAG
[ENA]
¢þ
>WENV170713982
LNFM01049387
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
298
214
-
Leu
GAG
[ENA]
¢þ
>W09133588
ACPG01000051
Betaproteobacteria
Nitrosomonas sp. AL212 [ACPG]
15159
15075
-
Leu
GAG
[ENA]
¡û
>W1810463639
PZZS01000006
Betaproteobacteria
Nitrosomonas nitrosa Nm91 [PZZS]
26155
26239
+
Leu
GAG
[ENA]
¡û
>W1810476931
QAOK01000004
Betaproteobacteria
Nitrosospira multiformis Nl12 [QAOK]
4710
4794
+
Leu
GAG
[ENA]
¡û
>W1810476973
QAOL01000004
Betaproteobacteria
Nitrosomonas ureae Nm4 [QAOL]
4580
4664
+
Leu
GAG
[ENA]
¡û
>W1810477104
QAOO01000001
Betaproteobacteria
Nitrosomonas nitrosa Nm90 [QAOO]
90842
90926
+
Leu
GAG
[ENA]
¡û
>W1810658839
QJJP01000009
Betaproteobacteria
Nitrosomonas sp. Nm84 [QJJP]
106786
106702
-
Leu
GAG
[ENA]
¡û
>C151082884
CP011451
Betaproteobacteria
Nitrosomonas communis Nm2 [CP011451]
886107
886023
-
Leu
GAG
[Ensembl]
¡û
>ENV09001080
ABSQ01029599
Freshwater sediment metagenome lwMethenol_C1
438
522
+
Leu
GAG
[ENA]
¡û
>C11115632
CP002552
Betaproteobacteria
Nitrosomonas sp. AL212 [CP002552]
2703886
2703802
-
Leu
GAG
[Ensembl]
¡û
>C161055564
CP013341
Betaproteobacteria
Nitrosomonas ureae Nm10 [CP013341]
1461678
1461762
+
Leu
GAG
[Ensembl]
¡û
>C161055594
CP013341
Betaproteobacteria
Nitrosomonas ureae Nm10 [CP013341]
1237
1153
-
Leu
GAG
[Ensembl]
¡û
>W1610753158
LNEF01000510
Betaproteobacteria
Nitrosomonadales bacterium Ga0074132 [LNEF]
2391
2475
+
Leu
GAG
[ENA]
¡û
>W1710517407
FNDH01000022
Betaproteobacteria
Nitrosomonas sp. Nm132 [FNDH]
41361
41277
-
Leu
GAG
[ENA]
¡û
>W1710527931
FNLN01000003
Betaproteobacteria
Nitrosomonas ureae [FNLN]
123446
123362
-
Leu
GAG
[ENA]
¡û
>W1710528514
FNNH01000002
Betaproteobacteria
Nitrosomonas communis [FNNH]
172527
172443
-
Leu
GAG
[ENA]
¡û
>W1710531182
FNPJ01000006
Betaproteobacteria
Nitrosomonas sp. Nm33 [FNPJ]
51287
51203
-
Leu
GAG
[ENA]
¡û
>W1710531577
FNPQ01000013
Betaproteobacteria
Nitrosomonas sp. Nm58 [FNPQ]
19119
19203
+
Leu
GAG
[ENA]
¡û
>W1710532593
FNQL01000006
Betaproteobacteria
Nitrosospira multiformis [FNQL]
229743
229659
-
Leu
GAG
[ENA]
¡û
>W1710538924
FNUX01000031
Betaproteobacteria
Nitrosomonas ureae [FNUX]
4571
4655
+
Leu
GAG
[ENA]
¡û
>W1710551230
FOFX01000030
Betaproteobacteria
Nitrosomonas ureae [FOFX]
4560
4644
+
Leu
GAG
[ENA]
¡û
>W1710565290
FORD01000004
Betaproteobacteria
Nitrosomonas sp. Nm34 [FORD]
88333
88249
-
Leu
GAG
[ENA]
¡û
>W1710569034
FOUB01000008
Betaproteobacteria
Nitrosomonas communis [FOUB]
32169
32085
-
Leu
GAG
[ENA]
¡û
>W1710569204
FOUF01000002
Betaproteobacteria
Nitrosomonas nitrosa [FOUF]
82604
82688
+
Leu
GAG
[ENA]
¡û
>W1710573494
FOXN01000007
Betaproteobacteria
Nitrosomonas cryotolerans [FOXN]
69239
69155
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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