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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.122347 (20 seq.)
>W1710806142
LKAQ01000005
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
12677
12761
+
Leu
TAG
[ENA]
¡û
>WENV180042862
LQAG01008357
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
533
449
-
Leu
TAG
[ENA]
¢þ
>WENV180043583
LQAI01001352
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
728
812
+
Leu
TAG
[ENA]
¢þ
>WENV180044013
LQAJ01000289
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
8088
8004
-
Leu
TAG
[ENA]
¢þ
>WENV183747111
PPCM01000215
[PPCM] marine sediment metagenome; marine sediment
66013
65929
-
Leu
TAG
[ENA]
¢þ
>WENV183747662
PPCM01014870
[PPCM] marine sediment metagenome; marine sediment
1003
919
-
Leu
TAG
[ENA]
¢þ
>WENV170419212
CEUM01108529
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
23419
23335
-
Leu
TAG
[ENA]
¢þ
>WENV170438238
CEUU01109327
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5874
5790
-
Leu
TAG
[ENA]
¢þ
>WENV170441681
CEUV01261033
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
604
688
+
Leu
TAG
[ENA]
¢þ
>WENV170657042
JTFO01071573
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
289
205
-
Leu
TAG
[ENA]
¢þ
>WENV170897628
MDTD01114798
[MDTD] marine metagenome; seawater
7934
8018
+
Leu
TAG
[ENA]
¢þ
>C181227015
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
946945
946861
-
Leu
TAG
-
¡û
>W1911738003
QTZO01000003
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
342267
342183
-
Leu
TAG
[ENA]
¡û
>W10111397
ADDI01000028
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
41027
40943
-
Leu
TAG
[ENA]
¡û
>C11106878
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
2032361
2032277
-
Leu
TAG
[Ensembl]
¡û
>W11114340
ADDI01000028
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
41027
40943
-
Leu
TAG
[ENA]
¡û
>W11149099
AEUJ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
284210
284294
+
Leu
TAG
[ENA]
¡û
>C121008967
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
284210
284294
+
Leu
TAG
[Ensembl]
¡û
>C161068274
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
2896995
2896911
-
Leu
TAG
[Ensembl]
¡û
>C131017910
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
320146
320230
+
Leu
TAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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