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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.122480 (63 seq.)
>W1710797252
LJSX01000001
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
137001
137085
+
Leu
CAG
[ENA]
¡û
>W1711179423
LWHQ01000023
Alphaproteobacteria
Methylobacterium platani [LWHQ]
102278
102362
+
Leu
CAG
[ENA]
¡û
>W1711179424
LWHQ01000023
Alphaproteobacteria
Methylobacterium platani [LWHQ]
102970
103054
+
Leu
CAG
[ENA]
¡û
>W1711505911
MKVY01000029
Alphaproteobacteria
Rhizobiales bacterium 65-9 [MKVY]
76986
76902
-
Leu
CAG
[ENA]
¡û
>W131163793
ARAA01000069
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
190569
190653
+
Leu
CAG
[ENA]
¡û
>w026455
ABAY01000003
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
28042
27961
-
Leu
CAG
[ENA]
¡û
>WENV180026561
FTIU01002908
[FTIU] metagenome; soil
5856
5772
-
Leu
CAG
[ENA]
¢þ
>WENV180029818
FTJL01006764
[FTJL] metagenome; soil
1940
2024
+
Leu
CAG
[ENA]
¢þ
>WENV180690610
OCZS010014395
[OCZS] soil metagenome; soil
238
154
-
Leu
CAG
[ENA]
¢þ
>WENV181233928
OFET01000326
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
675
591
-
Leu
CAG
[ENA]
¢þ
>WENV181234244
OFEU01000013
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
136957
137041
+
Leu
CAG
[ENA]
¢þ
>W08006125
ABIP01000001
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
107063
106982
-
Leu
CAG
[ENA]
¡û
>WENV183660645
ORJL010041747
[ORJL] groundwater metagenome; groundwater
271
187
-
Leu
CAG
[ENA]
¢þ
>WENV183692999
ORMF012004995
[ORMF] groundwater metagenome; groundwater
662
578
-
Leu
CAG
[ENA]
¢þ
>WENV170551946
CXWJ01031222
[CXWJ] wastewater metagenome; activated sludge
2438
2354
-
Leu
CAG
[ENA]
¢þ
>WENV170682766
LFIK01001126
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
17251
17167
-
Leu
CAG
[ENA]
¢þ
>WENV170709728
LNFM01000633
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
59244
59160
-
Leu
CAG
[ENA]
¢þ
>WENV170974355
MTKY01058566
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4368
4284
-
Leu
CAG
[ENA]
¢þ
>WENV170975074
MTKY01090226
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
245
161
-
Leu
CAG
[ENA]
¢þ
>C181180112
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
4335429
4335513
+
Leu
CAG
-
¡û
>C181180113
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
4335984
4336068
+
Leu
CAG
-
¡û
>C191005711
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
169136
169052
-
Leu
CAG
-
¡û
>W141821078
JQNH01000001
Alphaproteobacteria
Rhizobiales bacterium YIM 77505 [JQNH]
3764132
3764048
-
Leu
CAG
[ENA]
¡û
>C09107820
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
1501748
1501832
+
Leu
CAG
[Ensembl]
¡û
>W1911148366
NPEU01000095
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
2472
2556
+
Leu
CAG
[ENA]
¡û
>W1911148439
NPEW01000003
Alphaproteobacteria
Rhodoplanes serenus DSM 19946 [NPEW]
52416
52332
-
Leu
CAG
[ENA]
¡û
>W1911708582
QOWC01000199
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
642
558
-
Leu
CAG
[ENA]
¡û
>W1810079850
PELK01000009
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
612
696
+
Leu
CAG
[ENA]
¡û
>W1810079878
PELK01001186
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
88
4
-
Leu
CAG
[ENA]
¡û
>W1810268876
PRDS01000001
Alphaproteobacteria
Albidovulum inexpectatum DSM 12048 [PRDS]
387250
387166
-
Leu
CAG
[ENA]
¡û
>W1810368602
PVZS01000017
Alphaproteobacteria
Alsobacter soli SH9 [PVZS]
53204
53288
+
Leu
CAG
[ENA]
¡û
>W1810534721
QDAH01000009
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
103189
103273
+
Leu
CAG
[ENA]
¡û
>W1511400923
JTHG01000015
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
2528
2444
-
Leu
CAG
[ENA]
¡û
>W1511400924
JTHG01000015
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
886
802
-
Leu
CAG
[ENA]
¡û
>W1511563266
LABX01000252
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
25258
25342
+
Leu
CAG
[ENA]
¡û
>W1511563267
LABX01000252
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
30822
30906
+
Leu
CAG
[ENA]
¡û
>W1511563298
LABY01000059
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
29981
29897
-
Leu
CAG
[ENA]
¡û
>W1511563299
LABY01000059
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
29500
29416
-
Leu
CAG
[ENA]
¡û
>W1511563389
LABZ01000239
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
5866
5950
+
Leu
CAG
[ENA]
¡û
>W1511563390
LABZ01000239
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
13113
13197
+
Leu
CAG
[ENA]
¡û
>W1511624250
LCYG01000016
Alphaproteobacteria
Microvirga vignae BR3299 [LCYG]
98434
98518
+
Leu
CAG
[ENA]
¡û
>C161001189
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
2782156
2782072
-
Leu
CAG
[Ensembl]
¡û
>C161001190
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
2780518
2780434
-
Leu
CAG
[Ensembl]
¡û
>W1610047422
BBDG01001537
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
95
179
+
Leu
CAG
[ENA]
¡û
>W1610516222
FMBM01000003
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
230133
230049
-
Leu
CAG
[ENA]
¡û
>W1610590456
LDRL01000212
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
29226
29142
-
Leu
CAG
[ENA]
¡û
>W1610590457
LDRL01000212
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
27584
27500
-
Leu
CAG
[ENA]
¡û
>W1610590486
LDRM01000044
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
22336
22420
+
Leu
CAG
[ENA]
¡û
>W1610590487
LDRM01000044
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
23978
24062
+
Leu
CAG
[ENA]
¡û
>W1610590595
LDRN01000251
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
12646
12562
-
Leu
CAG
[ENA]
¡û
>W1610590596
LDRN01000251
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
11004
10920
-
Leu
CAG
[ENA]
¡û
>W1610661209
LJSX01000001
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
137001
137085
+
Leu
CAG
[ENA]
¡û
>W1610987324
LWHQ01000023
Alphaproteobacteria
Methylobacterium platani [LWHQ]
102278
102362
+
Leu
CAG
[ENA]
¡û
>W1610987325
LWHQ01000023
Alphaproteobacteria
Methylobacterium platani [LWHQ]
102970
103054
+
Leu
CAG
[ENA]
¡û
>W1710044027
BBDG01001537
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
95
179
+
Leu
CAG
[ENA]
¡û
>W1710501513
FMBM01000003
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
230133
230049
-
Leu
CAG
[ENA]
¡û
>W1710548848
FOEB01000033
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
12968
13052
+
Leu
CAG
[ENA]
¡û
>W1710709736
LDRL01000212
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
29226
29142
-
Leu
CAG
[ENA]
¡û
>W1710709737
LDRL01000212
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
27584
27500
-
Leu
CAG
[ENA]
¡û
>W1710709766
LDRM01000044
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
22336
22420
+
Leu
CAG
[ENA]
¡û
>W1710709767
LDRM01000044
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
23978
24062
+
Leu
CAG
[ENA]
¡û
>W1710709875
LDRN01000251
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
12646
12562
-
Leu
CAG
[ENA]
¡û
>W1710709876
LDRN01000251
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
11004
10920
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK