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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.122552 (107 seq.)
>W1710805254
LJZW01000009
Gammaproteobacteria
Xylella fastidiosa [LJZW]
40122
40206
+
Leu
GAG
[ENA]
¡û
>W1710809627
LKES01000004
Gammaproteobacteria
Xylella fastidiosa [LKES]
38166
38250
+
Leu
GAG
[ENA]
¡û
>W1710865495
LMGS01000001
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
1490469
1490385
-
Leu
GAG
[ENA]
¡û
>W1710868612
LMJF01000001
Gammaproteobacteria
Lysobacter sp. Root916 [LMJF]
1498019
1497935
-
Leu
GAG
[ENA]
¡û
>W1710868999
LMJO01000001
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
886897
886813
-
Leu
GAG
[ENA]
¡û
>W1711055760
LRVE01000023
Gammaproteobacteria
Xylella fastidiosa [LRVE]
22737
22653
-
Leu
GAG
[ENA]
¡û
>W1711055822
LRVF01000102
Gammaproteobacteria
Xylella fastidiosa [LRVF]
22737
22653
-
Leu
GAG
[ENA]
¡û
>W1711055844
LRVG01000019
Gammaproteobacteria
Xylella fastidiosa [LRVG]
22683
22599
-
Leu
GAG
[ENA]
¡û
>W1711055908
LRVH01000090
Gammaproteobacteria
Xylella fastidiosa [LRVH]
37984
38068
+
Leu
GAG
[ENA]
¡û
>W1711055933
LRVI01000007
Gammaproteobacteria
Xylella fastidiosa [LRVI]
38071
38155
+
Leu
GAG
[ENA]
¡û
>W1711056009
LRVJ01000105
Gammaproteobacteria
Xylella fastidiosa [LRVJ]
22604
22520
-
Leu
GAG
[ENA]
¡û
>W1711077993
LSMJ01000001
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa [LSMJ]
325033
325117
+
Leu
GAG
[ENA]
¡û
>W1711134779
LUYA01000006
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYA]
78286
78202
-
Leu
GAG
[ENA]
¡û
>W1711134835
LUYB01000008
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYB]
40300
40384
+
Leu
GAG
[ENA]
¡û
>W1711384963
MEDO01000017
Gammaproteobacteria
Arenimonas sp. SCN 70-307 [MEDO]
35476
35392
-
Leu
GAG
[ENA]
¡û
>W1711424101
MIDT01000081
Gammaproteobacteria
Xanthomonadales bacterium GWF1_69_6 [MIDT]
5255
5171
-
Leu
GAG
[ENA]
¡û
>W1711618101
MPAZ01000031
Gammaproteobacteria
Xylella fastidiosa [MPAZ]
38455
38539
+
Leu
GAG
[ENA]
¡û
>C171002840
CP010051
Gammaproteobacteria
Xylella fastidiosa Fb7 [CP010051]
1827834
1827750
-
Leu
GAG
-
¡û
>C171113941
CP020870
Gammaproteobacteria
Xylella fastidiosa subsp. pauca De Donno [CP020870]
316814
316898
+
Leu
GAG
-
¡û
>W131221332
AUAJ01000012
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex ATCC 35871 [AUAJ]
40098
40182
+
Leu
GAG
[ENA]
¡û
>W131222296
AUBD01000008
Gammaproteobacteria
Silanimonas lenta DSM 16282 [AUBD]
155650
155566
-
Leu
GAG
[ENA]
¡û
>W131227501
AUFF01000001
Gammaproteobacteria
Arenimonas composti DSM 18010 [AUFF]
165974
166058
+
Leu
GAG
[ENA]
¡û
>C027146
AE003849
Gammaproteobacteria
Xylella fastidiosa 9a5c [AE003849]
319058
319142
+
Leu
GAG
[Ensembl]
¡û
>C027193
AE009442
Gammaproteobacteria
Xylella fastidiosa Temecula1 [AE009442]
317497
317581
+
Leu
GAG
[Ensembl]
¡û
>WENV180036064
FTLB01217637
[FTLB] metagenome; soil
90
6
-
Leu
GAG
[ENA]
¢þ
>WENV180039700
LLBY010130805
[LLBY] soil metagenome; soil from tomato rhizosphere
303
219
-
Leu
GAG
[ENA]
¢þ
>w001636
AAAM03000002
Gammaproteobacteria
Xylella fastidiosa Ann-1 [AAAM]
159156
159240
+
Leu
GAG
[ENA]
¡û
>w001634
AAAM03000002
Gammaproteobacteria
Xylella fastidiosa Ann-1 [AAAM]
42819
42903
+
Leu
GAG
[ENA]
¡û
>w001612
AAAL02000004
Gammaproteobacteria
Xylella fastidiosa Dixon [AAAL]
162779
162698
-
Leu
GAG
[ENA]
¡û
>WENV180692582
OCZS010626237
[OCZS] soil metagenome; soil
245
161
-
Leu
GAG
[ENA]
¢þ
>W141094198
AVCH01000021
Gammaproteobacteria
Arenimonas malthae CC-JY-1 [AVCH]
6633
6717
+
Leu
GAG
[ENA]
¡û
>W141094323
AVCK01000001
Gammaproteobacteria
Arenimonas metalli CF5-1 [AVCK]
40962
41046
+
Leu
GAG
[ENA]
¡û
>W141096994
AVGA01000006
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex Griffin-1 [AVGA]
59754
59670
-
Leu
GAG
[ENA]
¡û
>W141148253
AWXU01000030
Gammaproteobacteria
Arenimonas composti TR7-09 = DSM 18010 [AWXU]
54582
54666
+
Leu
GAG
[ENA]
¡û
>W141148583
AWYH01000006
Gammaproteobacteria
Xylella fastidiosa 32 [AWYH]
38146
38230
+
Leu
GAG
[ENA]
¡û
>W141152276
AXBS01000007
Gammaproteobacteria
Xylella fastidiosa 6c [AXBS]
38135
38219
+
Leu
GAG
[ENA]
¡û
>W141153677
AXDP01000018
Gammaproteobacteria
Xylella fastidiosa Mul-MD [AXDP]
54599
54515
-
Leu
GAG
[ENA]
¡û
>C08011537
CP000941
Gammaproteobacteria
Xylella fastidiosa M12 [CP000941]
314248
314332
+
Leu
GAG
[Ensembl]
¡û
>C08011586
CP001011
Gammaproteobacteria
Xylella fastidiosa M23 [CP001011]
317375
317459
+
Leu
GAG
[Ensembl]
¡û
>WENV183731690
PJTT01000105
[PJTT] soil metagenome; Soil (2) enriched on wood chips
124303
124387
+
Leu
GAG
[ENA]
¢þ
>WENV170018656
BBPD01000268
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
10407
10491
+
Leu
GAG
[ENA]
¢þ
>WENV170019732
BBPE01000345
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
15116
15032
-
Leu
GAG
[ENA]
¢þ
>W141401120
JDSQ01000006
Gammaproteobacteria
Xylella taiwanensis PLS229 [JDSQ]
97788
97704
-
Leu
GAG
[ENA]
¡û
>WENV170577880
FSSH01002370
[FSSH] freshwater metagenome; drinking water
2617
2701
+
Leu
GAG
[ENA]
¢þ
>WENV170654693
JRYL01005777
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
779
863
+
Leu
GAG
[ENA]
¢þ
>WENV170713974
LNFM01048943
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2271
2187
-
Leu
GAG
[ENA]
¢þ
>C181007939
CP009790
Gammaproteobacteria
Xylella fastidiosa U24D [CP009790]
319053
319137
+
Leu
GAG
-
¡û
>C181007987
CP009823
Gammaproteobacteria
Xylella fastidiosa J1a12 [CP009823]
316634
316718
+
Leu
GAG
-
¡û
>C181008035
CP009826
Gammaproteobacteria
Xylella fastidiosa Pr8x [CP009826]
318657
318741
+
Leu
GAG
-
¡û
>C181008083
CP009829
Gammaproteobacteria
Xylella fastidiosa 3124 [CP009829]
316669
316753
+
Leu
GAG
-
¡û
>C181008131
CP009885
Gammaproteobacteria
Xylella fastidiosa Hib4 [CP009885]
316369
316453
+
Leu
GAG
-
¡û
>C181011020
CP011800
Gammaproteobacteria
Xylella taiwanensis PLS235 [CP011800]
378785
378869
+
Leu
GAG
-
¡û
>C181020189
CP016608
Gammaproteobacteria
Xylella fastidiosa Salento-1 [CP016608]
316810
316894
+
Leu
GAG
-
¡û
>C181020238
CP016610
Gammaproteobacteria
Xylella fastidiosa Salento-2 [CP016610]
316823
316907
+
Leu
GAG
-
¡û
>C181185981
CP029843
Gammaproteobacteria
Lysobacter maris HZ9B [CP029843]
1658252
1658336
+
Leu
GAG
-
¡û
>C191003475
AP018560
Gammaproteobacteria
Aerosticca soli Dysh456 [AP018560]
2077129
2077213
+
Leu
GAG
-
¡û
>C191139395
CP035376
Gammaproteobacteria
Luteimonas sp. YGD11-2 [CP035376]
2048625
2048541
-
Leu
GAG
-
¡û
>C191165700
CP039383
Gammaproteobacteria
Luteimonas yindakuii S-1072 [CP039383]
1940098
1940014
-
Leu
GAG
-
¡û
>W141564934
JIBD01000012
Gammaproteobacteria
Dyella japonica UNC79MFTsu3.2 [JIBD]
20805
20889
+
Leu
GAG
[ENA]
¡û
>W141699108
JMHP01000008
Gammaproteobacteria
Xylella fastidiosa [JMHP]
79070
78986
-
Leu
GAG
[ENA]
¡û
>W1910797075
MSPY01000003
Gammaproteobacteria
Oleiagrimonas sp. MCCC 1A03011 [MSPY]
538303
538219
-
Leu
GAG
[ENA]
¡û
>W1911199824
NRDP01000035
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
1977
1893
-
Leu
GAG
[ENA]
¡û
>W1911405216
NWQL01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0213 [NWQL]
774511
774595
+
Leu
GAG
[ENA]
¡û
>W1911582002
PHFP01000006
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8071 [PHFP]
38223
38307
+
Leu
GAG
[ENA]
¡û
>W1911582108
PHFR01000008
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP7970 [PHFR]
78135
78051
-
Leu
GAG
[ENA]
¡û
>W1911582145
PHFS01000006
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex CFBP8078 [PHFS]
75360
75276
-
Leu
GAG
[ENA]
¡û
>W1911582204
PHFT01000007
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8082 [PHFT]
78103
78019
-
Leu
GAG
[ENA]
¡û
>W1911582248
PHFU01000007
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8351 [PHFU]
79224
79140
-
Leu
GAG
[ENA]
¡û
>W1911582290
PHFV01000010
Gammaproteobacteria
Xylella fastidiosa subsp. sandyi CFBP8356 [PHFV]
57855
57771
-
Leu
GAG
[ENA]
¡û
>W1911710190
QPQV01000126
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex ESVL [QPQV]
38236
38320
+
Leu
GAG
[ENA]
¡û
>W1911710240
QPQW01000136
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex IVIA5901 [QPQW]
38236
38320
+
Leu
GAG
[ENA]
¡û
>W1911726698
QTJS01000007
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa XYL2055 [QTJS]
56591
56507
-
Leu
GAG
[ENA]
¡û
>W1911726748
QTJT01000007
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa XYL1732 [QTJT]
38837
38753
-
Leu
GAG
[ENA]
¡û
>W1911752142
QWLC01000099
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa IVIA5235 [QWLC]
65092
65008
-
Leu
GAG
[ENA]
¡û
>W1810354850
PVLF01000005
Gammaproteobacteria
Arenimonas caeni z29 [PVLF]
168092
168176
+
Leu
GAG
[ENA]
¡û
>W1810485566
QAVX01000003
Gammaproteobacteria
Dyella sp. C11 [QAVX]
118253
118337
+
Leu
GAG
[ENA]
¡û
>W1810597224
QGHC01000004
Gammaproteobacteria
Fulvimonas soli DSM 14263 [QGHC]
151370
151286
-
Leu
GAG
[ENA]
¡û
>W1810692807
QLKV01000011
Gammaproteobacteria
Thermomonas haemolytica HAMBI_2467 [QLKV]
18603
18687
+
Leu
GAG
[ENA]
¡û
>W1810762595
QQAH01000001
Gammaproteobacteria
Dyella tabacisoli L4-6 [QQAH]
277781
277697
-
Leu
GAG
[ENA]
¡û
>W1810785111
QRBE01000010
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
109842
109758
-
Leu
GAG
[ENA]
¡û
>W1810785139
QRBF01000001
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
780755
780671
-
Leu
GAG
[ENA]
¡û
>W1810858419
QTJR01000001
Gammaproteobacteria
Lysobacter soli KCTC 22011 [QTJR]
342398
342314
-
Leu
GAG
[ENA]
¡û
>W1810860378
QTSU01000001
Gammaproteobacteria
Lysobacter silvisoli zong2l5 [QTSU]
1536007
1535923
-
Leu
GAG
[ENA]
¡û
>C151010997
CP006696
Gammaproteobacteria
Xylella fastidiosa subsp. sandyi Ann-1 [CP006696]
517665
517749
+
Leu
GAG
[Ensembl]
¡û
>C151011700
CP006740
Gammaproteobacteria
Xylella fastidiosa MUL0034 [CP006740]
2094799
2094715
-
Leu
GAG
[Ensembl]
¡û
>W1511320725
JQAP01000001
Gammaproteobacteria
Xylella fastidiosa ATCC 35879 [JQAP]
317383
317467
+
Leu
GAG
[ENA]
¡û
>W1511352600
JROI01000010
Gammaproteobacteria
Oleiagrimonas soli 3.5X [JROI]
607053
607137
+
Leu
GAG
[ENA]
¡û
>C11123966
CP002165
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa GB514 [CP002165]
1437466
1437550
+
Leu
GAG
[Ensembl]
¡û
>W1511436633
JUJW01000001
Gammaproteobacteria
Xylella fastidiosa CoDiRO [JUJW]
324412
324496
+
Leu
GAG
[ENA]
¡û
>W11158553
AFDJ01000030
Gammaproteobacteria
Xylella fastidiosa EB92.1 [AFDJ]
68085
68001
-
Leu
GAG
[ENA]
¡û
>W1610521504
JNBT01000003
Gammaproteobacteria
Xylella fastidiosa subsp. pauca 11399 [JNBT]
43784
43868
+
Leu
GAG
[ENA]
¡û
>W1610669111
LJZW01000009
Gammaproteobacteria
Xylella fastidiosa [LJZW]
40122
40206
+
Leu
GAG
[ENA]
¡û
>W1610673733
LKES01000004
Gammaproteobacteria
Xylella fastidiosa [LKES]
38166
38250
+
Leu
GAG
[ENA]
¡û
>W1610727841
LMGS01000001
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
1490469
1490385
-
Leu
GAG
[ENA]
¡û
>W1610730958
LMJF01000001
Gammaproteobacteria
Lysobacter sp. Root916 [LMJF]
1498019
1497935
-
Leu
GAG
[ENA]
¡û
>W1610731345
LMJO01000001
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
886897
886813
-
Leu
GAG
[ENA]
¡û
>W1610896806
LRVE01000023
Gammaproteobacteria
Xylella fastidiosa [LRVE]
22737
22653
-
Leu
GAG
[ENA]
¡û
>W1610896868
LRVF01000102
Gammaproteobacteria
Xylella fastidiosa [LRVF]
22737
22653
-
Leu
GAG
[ENA]
¡û
>W1610896890
LRVG01000019
Gammaproteobacteria
Xylella fastidiosa [LRVG]
22683
22599
-
Leu
GAG
[ENA]
¡û
>W1610896954
LRVH01000090
Gammaproteobacteria
Xylella fastidiosa [LRVH]
37984
38068
+
Leu
GAG
[ENA]
¡û
>W1610896979
LRVI01000007
Gammaproteobacteria
Xylella fastidiosa [LRVI]
38071
38155
+
Leu
GAG
[ENA]
¡û
>W1610897055
LRVJ01000105
Gammaproteobacteria
Xylella fastidiosa [LRVJ]
22604
22520
-
Leu
GAG
[ENA]
¡û
>W1610917009
LSMJ01000001
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa [LSMJ]
325033
325117
+
Leu
GAG
[ENA]
¡û
>W1710575661
FOZI01000003
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
79144
79228
+
Leu
GAG
[ENA]
¡û
>W1710582971
FQUK01000009
Gammaproteobacteria
Thermomonas hydrothermalis [FQUK]
10684
10600
-
Leu
GAG
[ENA]
¡û
>W1710585670
FQWN01000007
Gammaproteobacteria
Xylella fastidiosa [FQWN]
38836
38920
+
Leu
GAG
[ENA]
¡û
>W1710620789
JNBT01000003
Gammaproteobacteria
Xylella fastidiosa subsp. pauca 11399 [JNBT]
43784
43868
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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