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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12329 (71 seq.)
>W1710805247
LJZW01000007
Gammaproteobacteria
Xylella fastidiosa [LJZW]
53483
53575
+
Ser
GCT
[ENA]
¡û
>W1710808076
LKDK01000012
Gammaproteobacteria
Xylella fastidiosa subsp. pauca [LKDK]
49902
49994
+
Ser
GCT
[ENA]
¡û
>W1710809637
LKES01000010
Gammaproteobacteria
Xylella fastidiosa [LKES]
47843
47935
+
Ser
GCT
[ENA]
¡û
>W1711055786
LRVE01000118
Gammaproteobacteria
Xylella fastidiosa [LRVE]
154588
154496
-
Ser
GCT
[ENA]
¡û
>W1711055805
LRVF01000048
Gammaproteobacteria
Xylella fastidiosa [LRVF]
154132
154040
-
Ser
GCT
[ENA]
¡û
>W1711055860
LRVG01000054
Gammaproteobacteria
Xylella fastidiosa [LRVG]
47899
47807
-
Ser
GCT
[ENA]
¡û
>W1711055890
LRVH01000054
Gammaproteobacteria
Xylella fastidiosa [LRVH]
49278
49370
+
Ser
GCT
[ENA]
¡û
>W1711055946
LRVI01000009
Gammaproteobacteria
Xylella fastidiosa [LRVI]
154745
154653
-
Ser
GCT
[ENA]
¡û
>W1711056004
LRVJ01000099
Gammaproteobacteria
Xylella fastidiosa [LRVJ]
65175
65083
-
Ser
GCT
[ENA]
¡û
>W1711077988
LSMJ01000001
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa [LSMJ]
129947
130039
+
Ser
GCT
[ENA]
¡û
>W1711134784
LUYA01000008
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYA]
47857
47765
-
Ser
GCT
[ENA]
¡û
>W1711134836
LUYB01000010
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYB]
47847
47755
-
Ser
GCT
[ENA]
¡û
>W1711134869
LUYC01000003
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYC]
92212
92304
+
Ser
GCT
[ENA]
¡û
>W1711618084
MPAZ01000015
Gammaproteobacteria
Xylella fastidiosa [MPAZ]
49127
49219
+
Ser
GCT
[ENA]
¡û
>C171002813
CP010051
Gammaproteobacteria
Xylella fastidiosa Fb7 [CP010051]
123599
123691
+
Ser
GCT
-
¡û
>C171113936
CP020870
Gammaproteobacteria
Xylella fastidiosa subsp. pauca De Donno [CP020870]
122212
122304
+
Ser
GCT
-
¡û
>W131221330
AUAJ01000011
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex ATCC 35871 [AUAJ]
48342
48250
-
Ser
GCT
[ENA]
¡û
>C027141
AE003849
Gammaproteobacteria
Xylella fastidiosa 9a5c [AE003849]
123996
124088
+
Ser
GCT
[Ensembl]
¡û
>C027188
AE009442
Gammaproteobacteria
Xylella fastidiosa Temecula1 [AE009442]
122451
122543
+
Ser
GCT
[Ensembl]
¡û
>w001710
AAAM03000136
Gammaproteobacteria
Xylella fastidiosa Ann-1 [AAAM]
2022
2116
+
Ser
GCT
[ENA]
¡û
>w001661
AAAM03000017
Gammaproteobacteria
Xylella fastidiosa Ann-1 [AAAM]
33556
33650
+
Ser
GCT
[ENA]
¡û
>w001613
AAAL02000006
Gammaproteobacteria
Xylella fastidiosa Dixon [AAAL]
47918
47824
-
Ser
GCT
[ENA]
¡û
>W141096995
AVGA01000007
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex Griffin-1 [AVGA]
47761
47669
-
Ser
GCT
[ENA]
¡û
>W141148576
AWYH01000003
Gammaproteobacteria
Xylella fastidiosa 32 [AWYH]
49112
49204
+
Ser
GCT
[ENA]
¡û
>W141152269
AXBS01000003
Gammaproteobacteria
Xylella fastidiosa 6c [AXBS]
50404
50496
+
Ser
GCT
[ENA]
¡û
>W141153685
AXDP01000022
Gammaproteobacteria
Xylella fastidiosa Mul-MD [AXDP]
48308
48216
-
Ser
GCT
[ENA]
¡û
>C08011532
CP000941
Gammaproteobacteria
Xylella fastidiosa M12 [CP000941]
121836
121928
+
Ser
GCT
[Ensembl]
¡û
>C08011581
CP001011
Gammaproteobacteria
Xylella fastidiosa M23 [CP001011]
122288
122380
+
Ser
GCT
[Ensembl]
¡û
>WENV170018598
BBPD01000115
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
6842
6934
+
Ser
GCT
[ENA]
¢þ
>WENV170019685
BBPE01000065
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
6949
7041
+
Ser
GCT
[ENA]
¢þ
>W141401137
JDSQ01000016
Gammaproteobacteria
Xylella taiwanensis PLS229 [JDSQ]
7284
7192
-
Ser
GCT
[ENA]
¡û
>C181007934
CP009790
Gammaproteobacteria
Xylella fastidiosa U24D [CP009790]
123996
124088
+
Ser
GCT
-
¡û
>C181007982
CP009823
Gammaproteobacteria
Xylella fastidiosa J1a12 [CP009823]
122447
122539
+
Ser
GCT
-
¡û
>C181008030
CP009826
Gammaproteobacteria
Xylella fastidiosa Pr8x [CP009826]
123589
123681
+
Ser
GCT
-
¡û
>C181008078
CP009829
Gammaproteobacteria
Xylella fastidiosa 3124 [CP009829]
122429
122521
+
Ser
GCT
-
¡û
>C181008126
CP009885
Gammaproteobacteria
Xylella fastidiosa Hib4 [CP009885]
122343
122435
+
Ser
GCT
-
¡û
>C181011015
CP011800
Gammaproteobacteria
Xylella taiwanensis PLS235 [CP011800]
145158
145250
+
Ser
GCT
-
¡û
>C181020184
CP016608
Gammaproteobacteria
Xylella fastidiosa Salento-1 [CP016608]
122224
122316
+
Ser
GCT
-
¡û
>C181020233
CP016610
Gammaproteobacteria
Xylella fastidiosa Salento-2 [CP016610]
122226
122318
+
Ser
GCT
-
¡û
>W141699137
JMHP01000027
Gammaproteobacteria
Xylella fastidiosa [JMHP]
47831
47739
-
Ser
GCT
[ENA]
¡û
>W1911582009
PHFP01000008
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8071 [PHFP]
67661
67753
+
Ser
GCT
[ENA]
¡û
>W1911582063
PHFQ01000007
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP7969 [PHFQ]
37198
37106
-
Ser
GCT
[ENA]
¡û
>W1911582111
PHFR01000009
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP7970 [PHFR]
30615
30523
-
Ser
GCT
[ENA]
¡û
>W1911582162
PHFS01000016
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex CFBP8078 [PHFS]
47849
47757
-
Ser
GCT
[ENA]
¡û
>W1911582207
PHFT01000008
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8082 [PHFT]
30615
30523
-
Ser
GCT
[ENA]
¡û
>W1911582253
PHFU01000011
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8351 [PHFU]
49437
49529
+
Ser
GCT
[ENA]
¡û
>W1911582287
PHFV01000008
Gammaproteobacteria
Xylella fastidiosa subsp. sandyi CFBP8356 [PHFV]
49346
49438
+
Ser
GCT
[ENA]
¡û
>W1911710199
QPQV01000129
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex ESVL [QPQV]
92071
92163
+
Ser
GCT
[ENA]
¡û
>W1911710249
QPQW01000139
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex IVIA5901 [QPQW]
92071
92163
+
Ser
GCT
[ENA]
¡û
>W1911726699
QTJS01000008
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa XYL2055 [QTJS]
37282
37190
-
Ser
GCT
[ENA]
¡û
>W1911726746
QTJT01000006
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa XYL1732 [QTJT]
49353
49445
+
Ser
GCT
[ENA]
¡û
>W1911752137
QWLC01000097
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa IVIA5235 [QWLC]
48379
48287
-
Ser
GCT
[ENA]
¡û
>C151010992
CP006696
Gammaproteobacteria
Xylella fastidiosa subsp. sandyi Ann-1 [CP006696]
322781
322873
+
Ser
GCT
[Ensembl]
¡û
>C151011695
CP006740
Gammaproteobacteria
Xylella fastidiosa MUL0034 [CP006740]
2289849
2289757
-
Ser
GCT
[Ensembl]
¡û
>W1511320720
JQAP01000001
Gammaproteobacteria
Xylella fastidiosa ATCC 35879 [JQAP]
122293
122385
+
Ser
GCT
[ENA]
¡û
>C11123961
CP002165
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa GB514 [CP002165]
1242449
1242541
+
Ser
GCT
[Ensembl]
¡û
>W1511436628
JUJW01000001
Gammaproteobacteria
Xylella fastidiosa CoDiRO [JUJW]
129810
129902
+
Ser
GCT
[ENA]
¡û
>W11158550
AFDJ01000015
Gammaproteobacteria
Xylella fastidiosa EB92.1 [AFDJ]
30524
30432
-
Ser
GCT
[ENA]
¡û
>W1610521497
JNBT01000002
Gammaproteobacteria
Xylella fastidiosa subsp. pauca 11399 [JNBT]
45842
45934
+
Ser
GCT
[ENA]
¡û
>W1610669104
LJZW01000007
Gammaproteobacteria
Xylella fastidiosa [LJZW]
53483
53575
+
Ser
GCT
[ENA]
¡û
>W1610672180
LKDK01000012
Gammaproteobacteria
Xylella fastidiosa subsp. pauca [LKDK]
49902
49994
+
Ser
GCT
[ENA]
¡û
>W1610673743
LKES01000010
Gammaproteobacteria
Xylella fastidiosa [LKES]
47843
47935
+
Ser
GCT
[ENA]
¡û
>W1610896832
LRVE01000118
Gammaproteobacteria
Xylella fastidiosa [LRVE]
154588
154496
-
Ser
GCT
[ENA]
¡û
>W1610896851
LRVF01000048
Gammaproteobacteria
Xylella fastidiosa [LRVF]
154132
154040
-
Ser
GCT
[ENA]
¡û
>W1610896906
LRVG01000054
Gammaproteobacteria
Xylella fastidiosa [LRVG]
47899
47807
-
Ser
GCT
[ENA]
¡û
>W1610896936
LRVH01000054
Gammaproteobacteria
Xylella fastidiosa [LRVH]
49278
49370
+
Ser
GCT
[ENA]
¡û
>W1610896992
LRVI01000009
Gammaproteobacteria
Xylella fastidiosa [LRVI]
154745
154653
-
Ser
GCT
[ENA]
¡û
>W1610897050
LRVJ01000099
Gammaproteobacteria
Xylella fastidiosa [LRVJ]
65175
65083
-
Ser
GCT
[ENA]
¡û
>W1610917004
LSMJ01000001
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa [LSMJ]
129947
130039
+
Ser
GCT
[ENA]
¡û
>W1710585673
FQWN01000008
Gammaproteobacteria
Xylella fastidiosa [FQWN]
56835
56927
+
Ser
GCT
[ENA]
¡û
>W1710620782
JNBT01000002
Gammaproteobacteria
Xylella fastidiosa subsp. pauca 11399 [JNBT]
45842
45934
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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