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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12363 (41 seq.)
>W1710907005
LNOL01000037
Betaproteobacteria
Alcaligenes faecalis [LNOL]
328026
328118
+
Ser
GCT
[ENA]
¡û
>W1710995946
LQAS01000010
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
484963
485055
+
Ser
GCT
[ENA]
¡û
>W131051768
AMXV01000016
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
144676
144584
-
Ser
GCT
[ENA]
¡û
>W131223066
AUBT01000011
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
71937
72029
+
Ser
GCT
[ENA]
¡û
>W1711710501
MSZN01000009
Betaproteobacteria
Alcaligenes faecalis [MSZN]
150656
150564
-
Ser
GCT
[ENA]
¡û
>W1711710552
MSZO01000005
Betaproteobacteria
Alcaligenes faecalis [MSZO]
150641
150549
-
Ser
GCT
[ENA]
¡û
>W1711710605
MSZP01000005
Betaproteobacteria
Alcaligenes faecalis [MSZP]
143823
143915
+
Ser
GCT
[ENA]
¡û
>W1711710635
MSZQ01000002
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
143818
143910
+
Ser
GCT
[ENA]
¡û
>W1711710696
MSZR01000003
Betaproteobacteria
Alcaligenes faecalis [MSZR]
156175
156083
-
Ser
GCT
[ENA]
¡û
>W1711711902
MTBI01000002
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
210572
210480
-
Ser
GCT
[ENA]
¡û
>W1712110531
NJIH01000006
Betaproteobacteria
Candidimonas nitroreducens [NJIH]
74336
74244
-
Ser
GCT
[ENA]
¡û
>C171115499
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
1076414
1076506
+
Ser
GCT
-
¡û
>W141104441
AVOG02000067
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
81298
81390
+
Ser
GCT
[ENA]
¡û
>W141237720
BBJQ01000004
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
175067
175159
+
Ser
GCT
[ENA]
¡û
>WENV183733549
PJTY01004240
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
365
273
-
Ser
GCT
[ENA]
¢þ
>WENV183741197
PJUF01054533
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
268
360
+
Ser
GCT
[ENA]
¢þ
>WENV170646018
JQGF01007557
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
1505
1597
+
Ser
GCT
[ENA]
¢þ
>WENV170655055
JTFN01003142
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1435
1343
-
Ser
GCT
[ENA]
¢þ
>WENV170655583
JTFN01048262
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
6
98
+
Ser
GCT
[ENA]
¢þ
>WENV170656463
JTFO01017726
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
6
98
+
Ser
GCT
[ENA]
¢þ
>WENV170656876
JTFO01053780
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
678
586
-
Ser
GCT
[ENA]
¢þ
>WENV170965524
MTEU01003630
[MTEU] soil metagenome; naturally attenuated soil
226
134
-
Ser
GCT
[ENA]
¢þ
>WENV170965697
MTEV01000581
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
1140
1048
-
Ser
GCT
[ENA]
¢þ
>C181053217
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
1005508
1005600
+
Ser
GCT
-
¡û
>C181088576
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
783962
784054
+
Ser
GCT
-
¡û
>C191023144
CP022987
Betaproteobacteria
Pollutimonas thiosulfatoxidans YE3 [CP022987]
1781605
1781513
-
Ser
GCT
-
¡û
>C191085254
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
1365012
1365104
+
Ser
GCT
-
¡û
>C191091154
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
3520062
3520154
+
Ser
GCT
-
¡û
>C191113943
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
2058639
2058731
+
Ser
GCT
-
¡û
>C191149640
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
2847875
2847967
+
Ser
GCT
-
¡û
>W1810583902
QEXO01000002
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
202552
202460
-
Ser
GCT
[ENA]
¡û
>W1511321034
JQCV01000004
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
212545
212453
-
Ser
GCT
[ENA]
¡û
>C11118185
CP002663
Betaproteobacteria
Pusillimonas sp. T7-7 [CP002663]
243406
243498
+
Ser
GCT
[Ensembl]
¡û
>W1511537473
JZBR01000007
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
801699
801791
+
Ser
GCT
[ENA]
¡û
>C161051378
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
1266803
1266711
-
Ser
GCT
[Ensembl]
¡û
>W1610093541
CYTB01000001
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
578612
578704
+
Ser
GCT
[ENA]
¡û
>W121091212
AKMR01000009
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
174630
174538
-
Ser
GCT
[ENA]
¡û
>W1610766019
LNOL01000037
Betaproteobacteria
Alcaligenes faecalis [LNOL]
328026
328118
+
Ser
GCT
[ENA]
¡û
>W1610850603
LQAS01000010
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
484963
485055
+
Ser
GCT
[ENA]
¡û
>W1610921545
LSUO01000030
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
8551
8643
+
Ser
GCT
[ENA]
¡û
>W1710082517
BDHG01000002
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
578250
578342
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK