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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12365 (125 seq.)
>W1710854731
LLXS01000053
Gammaproteobacteria
Stenotrophomonas pictorum maltophilia [LLXS]
6547
6455
-
Ser
GCT
[ENA]
¡û
>W1710899397
LNIW01000064
Gammaproteobacteria
Stenotrophomonas maltophilia [LNIW]
201338
201430
+
Ser
GCT
[ENA]
¡û
>W1711005849
LQNV01001072
Gammaproteobacteria
Stenotrophomonas maltophilia [LQNV]
189
281
+
Ser
GCT
[ENA]
¡û
>W1711089959
LTAC01000076
Gammaproteobacteria
Stenotrophomonas maltophilia [LTAC]
297971
298063
+
Ser
GCT
[ENA]
¡û
>W1711259494
LYVI01000001
Gammaproteobacteria
Stenotrophomonas maltophilia [LYVI]
399353
399445
+
Ser
GCT
[ENA]
¡û
>W1711283275
LZPC01000029
Gammaproteobacteria
Stenotrophomonas maltophilia [LZPC]
983
891
-
Ser
GCT
[ENA]
¡û
>W1711283329
LZPD01000004
Gammaproteobacteria
Stenotrophomonas maltophilia [LZPD]
49114
49206
+
Ser
GCT
[ENA]
¡û
>W1711386532
MEFO01000004
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
238097
238005
-
Ser
GCT
[ENA]
¡û
>W1711386574
MEFO01000016
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
12807
12715
-
Ser
GCT
[ENA]
¡û
>W1711387538
MEGS01000056
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-25 [MEGS]
4289
4197
-
Ser
GCT
[ENA]
¡û
>W1711456463
MJAS01000041
Gammaproteobacteria
Stenotrophomonas maltophilia [MJAS]
30499
30591
+
Ser
GCT
[ENA]
¡û
>W1711506697
MKWQ01000005
Gammaproteobacteria
Xanthomonadales bacterium 69-70 [MKWQ]
370842
370750
-
Ser
GCT
[ENA]
¡û
>W1712106596
NIVX01000108
Gammaproteobacteria
Stenotrophomonas maltophilia [NIVX]
180944
181036
+
Ser
GCT
[ENA]
¡û
>W1712106637
NIVY01000078
Gammaproteobacteria
Stenotrophomonas maltophilia [NIVY]
3052
2960
-
Ser
GCT
[ENA]
¡û
>PL171000797
CP010410
Gammaproteobacteria
Xanthomonas sacchari R1 plasmid:unnamed
365711
365619
-
Ser
GCT
[ENA]
¡û
>W131155325
AQOK01000774
Gammaproteobacteria
Xanthomonas sp. SHU 308 SHU308 [AQOK]
6234
6326
+
Ser
GCT
[ENA]
¡û
>W131180427
ARNB01000015
Gammaproteobacteria
[Pseudomonas] hibiscicola ATCC 19867 [ARNB]
25122
25030
-
Ser
GCT
[ENA]
¡û
>WENV180260492
OBEQ011205585
[OBEQ] groundwater metagenome; groundwater
3555
3463
-
Ser
GCT
[ENA]
¢þ
>WENV180310575
OBJT01004567
[OBJT] soil metagenome; soil
1600
1508
-
Ser
GCT
[ENA]
¢þ
>WENV180354829
OBNE01022283
[OBNE] groundwater metagenome; groundwater
16674
16766
+
Ser
GCT
[ENA]
¢þ
>WENV181221676
OFCW01000766
[OFCW] microbial mat metagenome; Microbial Mat
1184
1276
+
Ser
GCT
[ENA]
¢þ
>WENV181380893
OFRE01012148
[OFRE] wastewater metagenome; Exp Tend NO 50WW
1158
1066
-
Ser
GCT
[ENA]
¢þ
>WENV181382021
OFRF01050221
[OFRF] wastewater metagenome; Exp Tend CN 50WW
305
213
-
Ser
GCT
[ENA]
¢þ
>WENV181384005
OFRH01004995
[OFRH] wastewater metagenome; Exp Tend NO 100WW
1299
1207
-
Ser
GCT
[ENA]
¢þ
>WENV181385974
OFRL01000248
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
8115
8023
-
Ser
GCT
[ENA]
¢þ
>WENV181412143
OGCI01087932
[OGCI] hot springs metagenome; Hot spring water
418
326
-
Ser
GCT
[ENA]
¢þ
>WENV181804861
OGSG01003671
[OGSG] human gut metagenome; fecal sample 2 from infant 7
511
603
+
Ser
GCT
[ENA]
¢þ
>W141207709
AZNZ01000008
Gammaproteobacteria
Pseudoxanthomonas sp. J31 [AZNZ]
135097
135189
+
Ser
GCT
[ENA]
¡û
>W141251655
CBQT010000055
Gammaproteobacteria
Stenotrophomonas maltophilia stmalt0377 [CBQT]
47815
47907
+
Ser
GCT
[ENA]
¡û
>WENV182797070
OJST01000266
[OJST] human gut metagenome; human gut
8031
7939
-
Ser
GCT
[ENA]
¢þ
>WENV182798375
OJTH01000519
[OJTH] human gut metagenome; human gut
1111
1203
+
Ser
GCT
[ENA]
¢þ
>WENV183734082
PJTZ01000042
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
144328
144420
+
Ser
GCT
[ENA]
¢þ
>WENV183738779
PJUE01000188
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
49516
49608
+
Ser
GCT
[ENA]
¢þ
>WENV183740001
PJUF01000131
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
27443
27535
+
Ser
GCT
[ENA]
¢þ
>C181014114
CP014014
Gammaproteobacteria
Stenotrophomonas maltophilia FDAARGOS_92 [CP014014]
826775
826867
+
Ser
GCT
-
¡û
>C181039139
CP019797
Gammaproteobacteria
Stenotrophomonas acidaminiphila SUNEO [CP019797]
2243514
2243422
-
Ser
GCT
-
¡û
>C181056516
CP022053
Gammaproteobacteria
Stenotrophomonas maltophilia FDAARGOS_325 [CP022053]
1296339
1296247
-
Ser
GCT
-
¡û
>C181115630
CP025298
Gammaproteobacteria
Stenotrophomonas maltophilia CSM2 [CP025298]
1751174
1751266
+
Ser
GCT
-
¡û
>C181226675
LT906480
Gammaproteobacteria
Stenotrophomonas maltophilia NCTC10257 [LT906480]
1910007
1910099
+
Ser
GCT
-
¡û
>C191073917
CP031167
Gammaproteobacteria
Stenotrophomonas sp. ASS1 [CP031167]
1605871
1605963
+
Ser
GCT
-
¡û
>W1910647559
LXXA01000046
Gammaproteobacteria
Stenotrophomonas maltophilia SM-20065 [LXXA]
11948
12040
+
Ser
GCT
[ENA]
¡û
>W1910647633
LXXB01000095
Gammaproteobacteria
Stenotrophomonas maltophilia SM-3226 [LXXB]
11920
12012
+
Ser
GCT
[ENA]
¡û
>W1910647758
LXXD01000023
Gammaproteobacteria
Stenotrophomonas maltophilia SM-7180 [LXXD]
11897
11989
+
Ser
GCT
[ENA]
¡û
>W1910648121
LXXI01000236
Gammaproteobacteria
Stenotrophomonas maltophilia SM-4416 [LXXI]
3007
2915
-
Ser
GCT
[ENA]
¡û
>W1910648205
LXXK01000068
Gammaproteobacteria
Stenotrophomonas maltophilia SM-19467 [LXXK]
434
342
-
Ser
GCT
[ENA]
¡û
>W1910648662
LXXR01000067
Gammaproteobacteria
Stenotrophomonas maltophilia SM-13670 [LXXR]
12155
12247
+
Ser
GCT
[ENA]
¡û
>W1910649180
LXXZ01000026
Gammaproteobacteria
Stenotrophomonas sepilia SM-16975 [LXXZ]
125508
125416
-
Ser
GCT
[ENA]
¡û
>W1910693323
MDEK01000014
Gammaproteobacteria
Xanthomonas sacchari CFBP4641 [MDEK]
15784
15876
+
Ser
GCT
[ENA]
¡û
>W1910746032
MIGX01000140
Gammaproteobacteria
Xanthomonas theicola CFBP 4691 [MIGX]
563
471
-
Ser
GCT
[ENA]
¡û
>W1910786501
MQWR01000035
Gammaproteobacteria
Stenotrophomonas maltophilia ZC_2011 [MQWR]
2998
2906
-
Ser
GCT
[ENA]
¡û
>W1910787114
MQXA01000042
Gammaproteobacteria
Stenotrophomonas maltophilia CV_2006_STM1 [MQXA]
40022
40114
+
Ser
GCT
[ENA]
¡û
>W1910787268
MQXC01000060
Gammaproteobacteria
Stenotrophomonas maltophilia CV_2007 [MQXC]
40055
40147
+
Ser
GCT
[ENA]
¡û
>W1910787919
MQXM01000038
Gammaproteobacteria
Stenotrophomonas maltophilia MS_2011 [MQXM]
28257
28165
-
Ser
GCT
[ENA]
¡û
>W1910788095
MQXO01000056
Gammaproteobacteria
Stenotrophomonas maltophilia MS_2013 [MQXO]
12012
12104
+
Ser
GCT
[ENA]
¡û
>W1910788175
MQXP01000124
Gammaproteobacteria
Stenotrophomonas maltophilia MS_2014 [MQXP]
3018
2926
-
Ser
GCT
[ENA]
¡û
>W1910788658
MQXX01000035
Gammaproteobacteria
Stenotrophomonas maltophilia TG_2008_STM2 [MQXX]
24509
24417
-
Ser
GCT
[ENA]
¡û
>W1910788840
MQXZ01000074
Gammaproteobacteria
Stenotrophomonas maltophilia TG_2009_STM2 [MQXZ]
12129
12221
+
Ser
GCT
[ENA]
¡û
>W1910788941
MQYB01000065
Gammaproteobacteria
Stenotrophomonas maltophilia TG_2012_STM2 [MQYB]
24495
24403
-
Ser
GCT
[ENA]
¡û
>W1910789033
MQYC01000094
Gammaproteobacteria
Stenotrophomonas maltophilia TG_2013 [MQYC]
12045
12137
+
Ser
GCT
[ENA]
¡û
>W1910789101
MQYE01000007
Gammaproteobacteria
Stenotrophomonas maltophilia TG_2014_STM2 [MQYE]
2457
2365
-
Ser
GCT
[ENA]
¡û
>W1910789471
MQYJ01000044
Gammaproteobacteria
Stenotrophomonas maltophilia Fma_2009 [MQYJ]
3010
2918
-
Ser
GCT
[ENA]
¡û
>W1910790016
MQYR01000104
Gammaproteobacteria
Stenotrophomonas maltophilia AV_2011 [MQYR]
3005
2913
-
Ser
GCT
[ENA]
¡û
>W1910790279
MQYV01000056
Gammaproteobacteria
Stenotrophomonas maltophilia GC_2008_colA [MQYV]
2999
2907
-
Ser
GCT
[ENA]
¡û
>W1910790324
MQYW01000030
Gammaproteobacteria
Stenotrophomonas maltophilia GC_2008_colB [MQYW]
11986
12078
+
Ser
GCT
[ENA]
¡û
>W1910790532
MQYZ01000035
Gammaproteobacteria
Stenotrophomonas maltophilia GC_2011 [MQYZ]
68118
68026
-
Ser
GCT
[ENA]
¡û
>W1910790742
MQZC01000033
Gammaproteobacteria
Stenotrophomonas maltophilia GC_2013_STM1 [MQZC]
3024
2932
-
Ser
GCT
[ENA]
¡û
>W1910791097
MQZH01000015
Gammaproteobacteria
Stenotrophomonas maltophilia MC_2010_STM1 [MQZH]
2462
2370
-
Ser
GCT
[ENA]
¡û
>W1910791313
MQZK01000066
Gammaproteobacteria
Stenotrophomonas maltophilia MC_2011_STM2 [MQZK]
11990
12082
+
Ser
GCT
[ENA]
¡û
>W1910791404
MQZM01000020
Gammaproteobacteria
Stenotrophomonas maltophilia MC_2013 [MQZM]
12260
12352
+
Ser
GCT
[ENA]
¡û
>W1910791503
MQZN01000060
Gammaproteobacteria
Stenotrophomonas maltophilia MC_2014 [MQZN]
2459
2367
-
Ser
GCT
[ENA]
¡û
>W1910791919
MQZT01000041
Gammaproteobacteria
Stenotrophomonas maltophilia SanG_2011 [MQZT]
12010
12102
+
Ser
GCT
[ENA]
¡û
>W1910791990
MQZU01000035
Gammaproteobacteria
Stenotrophomonas maltophilia SanG_2012 [MQZU]
169551
169643
+
Ser
GCT
[ENA]
¡û
>W1910792078
MQZV01000073
Gammaproteobacteria
Stenotrophomonas maltophilia SanG_2013 [MQZV]
2987
2895
-
Ser
GCT
[ENA]
¡û
>W1910887415
NEQX01000002
Gammaproteobacteria
Stenotrophomonas maltophilia EP13 [NEQX]
12110
12202
+
Ser
GCT
[ENA]
¡û
>W1910887635
NERA01000002
Gammaproteobacteria
Stenotrophomonas maltophilia C357 [NERA]
821022
821114
+
Ser
GCT
[ENA]
¡û
>W1910887695
NERB01000003
Gammaproteobacteria
Stenotrophomonas maltophilia E861 [NERB]
12004
12096
+
Ser
GCT
[ENA]
¡û
>W1910887840
NERD01000002
Gammaproteobacteria
Stenotrophomonas maltophilia E301 [NERD]
1161424
1161516
+
Ser
GCT
[ENA]
¡û
>W1910887972
NERF01000003
Gammaproteobacteria
Stenotrophomonas maltophilia E999 [NERF]
1022025
1022117
+
Ser
GCT
[ENA]
¡û
>W1910888064
NERG01000003
Gammaproteobacteria
Stenotrophomonas maltophilia E759 [NERG]
1294745
1294837
+
Ser
GCT
[ENA]
¡û
>W1910888102
NERH01000007
Gammaproteobacteria
Stenotrophomonas maltophilia E729 [NERH]
520725
520817
+
Ser
GCT
[ENA]
¡û
>W1911708878
QPFB01000001
Gammaproteobacteria
Stenotrophomonas sp. ATCM1_4 [QPFB]
608222
608314
+
Ser
GCT
[ENA]
¡û
>W1911765756
QXDB01000005
Gammaproteobacteria
Stenotrophomonas sp. AG209 [QXDB]
174443
174535
+
Ser
GCT
[ENA]
¡û
>W1810377084
PXII01000003
Gammaproteobacteria
Stenotrophomonas maltophilia SP4501 [PXII]
37326
37234
-
Ser
GCT
[ENA]
¡û
>W1810377362
PXIM01000103
Gammaproteobacteria
Stenotrophomonas maltophilia BA26854 [PXIM]
4026
3934
-
Ser
GCT
[ENA]
¡û
>W1810394599
PYBT01000018
Gammaproteobacteria
Stenotrophomonas maltophilia 17307 [PYBT]
68205
68113
-
Ser
GCT
[ENA]
¡û
>W1810402656
PYHN01000027
Gammaproteobacteria
Stenotrophomonas maltophilia 16185 [PYHN]
12141
12233
+
Ser
GCT
[ENA]
¡û
>W1810603083
QGKQ01000027
Gammaproteobacteria
Stenotrophomonas maltophilia HPCN19 [QGKQ]
12226
12318
+
Ser
GCT
[ENA]
¡û
>C151077914
CP011144
Gammaproteobacteria
Pseudoxanthomonas suwonensis J1 [CP011144]
3197755
3197847
+
Ser
GCT
[Ensembl]
¡û
>C151079496
CP011306
Gammaproteobacteria
Stenotrophomonas maltophilia ISMMS2R [CP011306]
1668224
1668316
+
Ser
GCT
-
¡û
>W1510667634
CWHS01000001
Gammaproteobacteria
Stenotrophomonas maltophilia [CWHS]
21915
21823
-
Ser
GCT
[ENA]
¡û
>W1511438396
JUMH01000033
Gammaproteobacteria
Stenotrophomonas maltophilia 951_SMAL [JUMH]
11953
12045
+
Ser
GCT
[ENA]
¡û
>W1511440331
JUPB01000081
Gammaproteobacteria
Stenotrophomonas maltophilia 892_SMAL [JUPB]
11972
12064
+
Ser
GCT
[ENA]
¡û
>W1511441382
JUQM01000076
Gammaproteobacteria
Stenotrophomonas maltophilia 854_SMAL [JUQM]
28092
28000
-
Ser
GCT
[ENA]
¡û
>W1511456865
JVHW01000028
Gammaproteobacteria
Stenotrophomonas maltophilia 419_SMAL [JVHW]
38597
38505
-
Ser
GCT
[ENA]
¡û
>W1511457094
JVHZ01000090
Gammaproteobacteria
Stenotrophomonas maltophilia 416_SMAL [JVHZ]
11983
12075
+
Ser
GCT
[ENA]
¡û
>W1511461011
JVMC01000110
Gammaproteobacteria
Stenotrophomonas maltophilia 31_SMAL [JVMC]
39171
39079
-
Ser
GCT
[ENA]
¡û
>W1511468771
JVUP01000125
Gammaproteobacteria
Stenotrophomonas maltophilia 1305.rep2_SMAL [JVUP]
28017
27925
-
Ser
GCT
[ENA]
¡û
>W1511468836
JVUR01000046
Gammaproteobacteria
Stenotrophomonas maltophilia 1304_SMAL [JVUR]
7734
7826
+
Ser
GCT
[ENA]
¡û
>W1511470306
JVWJ01000240
Gammaproteobacteria
Stenotrophomonas maltophilia 1265_SMAL [JVWJ]
11133
11041
-
Ser
GCT
[ENA]
¡û
>W1511474508
JWBW01000151
Gammaproteobacteria
Stenotrophomonas maltophilia 1136_SMAL [JWBW]
11980
12072
+
Ser
GCT
[ENA]
¡û
>W1511475200
JWCW01000036
Gammaproteobacteria
Stenotrophomonas maltophilia 1100_SMAL [JWCW]
24127
24035
-
Ser
GCT
[ENA]
¡û
>W1511508443
JXQE01000055
Gammaproteobacteria
Xanthomonas sacchari LMG 476 [JXQE]
1913592
1913684
+
Ser
GCT
[ENA]
¡û
>W1511543416
JZIU01000001
Gammaproteobacteria
Stenotrophomonas maltophilia ISMMS4 [JZIU]
4613439
4613347
-
Ser
GCT
[ENA]
¡û
>W1511551678
JZTX01000001
Gammaproteobacteria
Stenotrophomonas maltophilia ISMMS7 [JZTX]
1804550
1804642
+
Ser
GCT
[ENA]
¡û
>W1511642237
LDVP01000032
Gammaproteobacteria
Stenotrophomonas maltophilia A2 [LDVP]
16675
16767
+
Ser
GCT
[ENA]
¡û
>W1511642392
LDVT01000088
Gammaproteobacteria
Stenotrophomonas maltophilia C11 [LDVT]
1304
1212
-
Ser
GCT
[ENA]
¡û
>W1511684055
LFME01000001
Gammaproteobacteria
Xanthomonas sp. NCPPB 1128 pv. phaseoli NCPPB1128 [LFME]
237207
237299
+
Ser
GCT
[ENA]
¡û
>C161018647
CP008838
Gammaproteobacteria
Stenotrophomonas maltophilia 13637 [CP008838]
1855093
1855185
+
Ser
GCT
[Ensembl]
¡û
>C161047159
CP012900
Gammaproteobacteria
Stenotrophomonas acidaminiphila ZAC14D2_NAIMI4_2 [CP012900]
2613472
2613380
-
Ser
GCT
[Ensembl]
¡û
>W1610085614
CVIU01000011
Gammaproteobacteria
Stenotrophomonas maltophilia [CVIU]
11898
11990
+
Ser
GCT
[ENA]
¡û
>W1610586747
LDJG01000011
Gammaproteobacteria
Stenotrophomonas nitritireducens [LDJG]
32328
32420
+
Ser
GCT
[ENA]
¡û
>W1610587176
LDJN01000012
Gammaproteobacteria
Stenotrophomonas pavanii [LDJN]
124322
124414
+
Ser
GCT
[ENA]
¡û
>W1610717008
LLXS01000053
Gammaproteobacteria
Stenotrophomonas pictorum maltophilia [LLXS]
6547
6455
-
Ser
GCT
[ENA]
¡û
>W1610717021
LLXT01000047
Gammaproteobacteria
Stenotrophomonas geniculata ATCC 19374 = JCM 13324 [LLXT]
3016
2924
-
Ser
GCT
[ENA]
¡û
>W1610759800
LNIW01000064
Gammaproteobacteria
Stenotrophomonas maltophilia [LNIW]
201338
201430
+
Ser
GCT
[ENA]
¡û
>W1610856499
LQNV01001072
Gammaproteobacteria
Stenotrophomonas maltophilia [LQNV]
189
281
+
Ser
GCT
[ENA]
¡û
>W1610924303
LTAC01000076
Gammaproteobacteria
Stenotrophomonas maltophilia [LTAC]
297971
298063
+
Ser
GCT
[ENA]
¡û
>W1611021583
LYVI01000001
Gammaproteobacteria
Stenotrophomonas maltophilia [LYVI]
399353
399445
+
Ser
GCT
[ENA]
¡û
>W1611041913
LZPC01000029
Gammaproteobacteria
Stenotrophomonas maltophilia [LZPC]
983
891
-
Ser
GCT
[ENA]
¡û
>W1611041967
LZPD01000004
Gammaproteobacteria
Stenotrophomonas maltophilia [LZPD]
49114
49206
+
Ser
GCT
[ENA]
¡û
>W1710090203
CVIU01000011
Gammaproteobacteria
Stenotrophomonas maltophilia [CVIU]
11898
11990
+
Ser
GCT
[ENA]
¡û
>W1710513564
FNAG01000001
Gammaproteobacteria
Aquimonas voraii [FNAG]
388381
388473
+
Ser
GCT
[ENA]
¡û
>W1710520493
FNFQ01000006
Gammaproteobacteria
Stenotrophomonas pavanii [FNFQ]
42042
41950
-
Ser
GCT
[ENA]
¡û
>W1710705877
LDJG01000011
Gammaproteobacteria
Stenotrophomonas nitritireducens [LDJG]
32328
32420
+
Ser
GCT
[ENA]
¡û
>W1710706306
LDJN01000012
Gammaproteobacteria
Stenotrophomonas pavanii [LDJN]
124322
124414
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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