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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12367 (51 seq.)
>W1710911646
LNRI01000005
Gammaproteobacteria
Vibrio sp. CL1 wodanis [LNRI]
33463
33371
-
Ser
GCT
[ENA]
¡û
>W1710911761
LNRJ01000004
Gammaproteobacteria
Vibrio sp. CL3 wodanis [LNRJ]
33394
33302
-
Ser
GCT
[ENA]
¡û
>W1710911855
LNRK01000005
Gammaproteobacteria
Vibrio sp. CL4 wodanis [LNRK]
33948
33856
-
Ser
GCT
[ENA]
¡û
>W1710911970
LNRL01000004
Gammaproteobacteria
Vibrio sp. CL5 wodanis [LNRL]
33661
33569
-
Ser
GCT
[ENA]
¡û
>W1710912079
LNRM01000006
Gammaproteobacteria
Vibrio sp. CL6 wodanis [LNRM]
335934
336026
+
Ser
GCT
[ENA]
¡û
>W1710912225
LNRN01000003
Gammaproteobacteria
Vibrio sp. CL7 wodanis [LNRN]
33492
33400
-
Ser
GCT
[ENA]
¡û
>W1710987359
LPUO01000045
Gammaproteobacteria
Aeromonas schubertii [LPUO]
126937
126845
-
Ser
GCT
[ENA]
¡û
>W1710987365
LPUO01000045
Gammaproteobacteria
Aeromonas schubertii [LPUO]
126187
126095
-
Ser
GCT
[ENA]
¡û
>W1711361062
MDKE01000011
Gammaproteobacteria
Oceanisphaera psychrotolerans [MDKE]
216329
216237
-
Ser
GCT
[ENA]
¡û
>W131124553
APVG01000007
Gammaproteobacteria
Aeromonas diversa 2478-85 [APVG]
68734
68642
-
Ser
GCT
[ENA]
¡û
>W131124557
APVG01000007
Gammaproteobacteria
Aeromonas diversa 2478-85 [APVG]
68236
68144
-
Ser
GCT
[ENA]
¡û
>W131180114
ARMW01000027
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
120189
120281
+
Ser
GCT
[ENA]
¡û
>WENV170014352
AYRE01005787
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
63
155
+
Ser
GCT
[ENA]
¢þ
>WENV170015913
AZIJ01004145
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
590
682
+
Ser
GCT
[ENA]
¢þ
>WENV170658054
JTFP01049275
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
798
706
-
Ser
GCT
[ENA]
¢þ
>WENV170658430
JTFP01111145
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
187
95
-
Ser
GCT
[ENA]
¢þ
>C181012455
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
3358819
3358727
-
Ser
GCT
-
¡û
>C191170451
CP039611
Gammaproteobacteria
Aeromonas schubertii LF1708 [CP039611]
568871
568963
+
Ser
GCT
-
¡û
>C191170457
CP039611
Gammaproteobacteria
Aeromonas schubertii LF1708 [CP039611]
569637
569729
+
Ser
GCT
-
¡û
>W1910784547
MPZM01000015
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
36587
36495
-
Ser
GCT
[ENA]
¡û
>W1910784551
MPZM01000015
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
36135
36043
-
Ser
GCT
[ENA]
¡û
>W1910796763
MSCP01000001
Gammaproteobacteria
Aliivibrio sifiae NBRC 105001 [MSCP]
2085587
2085495
-
Ser
GCT
[ENA]
¡û
>W1910852595
NBIM01000001
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
1844461
1844369
-
Ser
GCT
[ENA]
¡û
>W1911075415
NMUO01000071
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
18124
18216
+
Ser
GCT
[ENA]
¡û
>W1911174141
NQJF01000003
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
73664
73572
-
Ser
GCT
[ENA]
¡û
>W1911538805
OMPC01000012
Gammaproteobacteria
Aliivibrio sp. EL58 [OMPC]
349036
349128
+
Ser
GCT
[ENA]
¡û
>W1911538807
OMPC01000012
Gammaproteobacteria
Aliivibrio sp. EL58 [OMPC]
349332
349424
+
Ser
GCT
[ENA]
¡û
>W1810390122
PXYG01000002
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
601154
601062
-
Ser
GCT
[ENA]
¡û
>W1810390206
PXYH01000006
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
25344
25436
+
Ser
GCT
[ENA]
¡û
>W1810471819
QAGM01000002
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
119417
119325
-
Ser
GCT
[ENA]
¡û
>W1810533062
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
2367081
2366989
-
Ser
GCT
[ENA]
¡û
>C151102995
LN554846
Gammaproteobacteria
Aliivibrio wodanis [LN554846, LN554847]
622302
622394
+
Ser
GCT
[Ensembl]
¡û
>C151102997
LN554846
Gammaproteobacteria
Aliivibrio wodanis [LN554846, LN554847]
622598
622690
+
Ser
GCT
[Ensembl]
¡û
>W1510066111
CDBY01000078
Gammaproteobacteria
Aeromonas simiae CIP 107798 [CDBY]
24651
24743
+
Ser
GCT
[ENA]
¡û
>W1510066527
CDCE01000031
Gammaproteobacteria
Aeromonas diversa CECT 4254 [CDCE]
82803
82895
+
Ser
GCT
[ENA]
¡û
>W1510066533
CDCE01000031
Gammaproteobacteria
Aeromonas diversa CECT 4254 [CDCE]
83573
83665
+
Ser
GCT
[ENA]
¡û
>W1510067486
CDDB01000008
Gammaproteobacteria
Aeromonas schubertii CECT 4240 [CDDB]
167
259
+
Ser
GCT
[ENA]
¡û
>W1510067573
CDDB01000089
Gammaproteobacteria
Aeromonas schubertii CECT 4240 [CDDB]
396
304
-
Ser
GCT
[ENA]
¡û
>C121007349
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
3286236
3286144
-
Ser
GCT
[Ensembl]
¡û
>C161050658
CP013067
Gammaproteobacteria
Aeromonas schubertii WL1483 [CP013067]
556705
556797
+
Ser
GCT
[Ensembl]
¡û
>C161050662
CP013067
Gammaproteobacteria
Aeromonas schubertii WL1483 [CP013067]
557203
557295
+
Ser
GCT
[Ensembl]
¡û
>W1610770005
LNRI01000005
Gammaproteobacteria
Vibrio sp. CL1 wodanis [LNRI]
33463
33371
-
Ser
GCT
[ENA]
¡û
>W1610770120
LNRJ01000004
Gammaproteobacteria
Vibrio sp. CL3 wodanis [LNRJ]
33394
33302
-
Ser
GCT
[ENA]
¡û
>W1610770214
LNRK01000005
Gammaproteobacteria
Vibrio sp. CL4 wodanis [LNRK]
33948
33856
-
Ser
GCT
[ENA]
¡û
>W1610770329
LNRL01000004
Gammaproteobacteria
Vibrio sp. CL5 wodanis [LNRL]
33661
33569
-
Ser
GCT
[ENA]
¡û
>W1610770438
LNRM01000006
Gammaproteobacteria
Vibrio sp. CL6 wodanis [LNRM]
335934
336026
+
Ser
GCT
[ENA]
¡û
>W1610770584
LNRN01000003
Gammaproteobacteria
Vibrio sp. CL7 wodanis [LNRN]
33492
33400
-
Ser
GCT
[ENA]
¡û
>W1610842303
LPUO01000045
Gammaproteobacteria
Aeromonas schubertii [LPUO]
126937
126845
-
Ser
GCT
[ENA]
¡û
>W1610842309
LPUO01000045
Gammaproteobacteria
Aeromonas schubertii [LPUO]
126187
126095
-
Ser
GCT
[ENA]
¡û
>W1710596080
FTMJ01000003
Gammaproteobacteria
Aeromonas sp. RU39B [FTMJ]
325069
324977
-
Ser
GCT
[ENA]
¡û
>W1710596086
FTMJ01000003
Gammaproteobacteria
Aeromonas sp. RU39B [FTMJ]
324305
324213
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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