This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.123705 (35 seq.)
>A171000798
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
614690
614615
-
Cys
GCA
-
¡û
>A171002610
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
218586
218661
+
Cys
GCA
-
¡û
>A171003943
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
230987
231062
+
Cys
GCA
-
¡û
>A171005800
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
1826544
1826619
+
Cys
GCA
-
¡û
>WENV180273574
OBEU01000018
[OBEU] marine metagenome; marine
6471
6546
+
Cys
GCA
[ENA]
¢þ
>WENV180318544
OBKM01001683
[OBKM] metagenome; water
8391
8316
-
Cys
GCA
[ENA]
¢þ
>WENV170008675
APHM01000513
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
51
127
+
Cys
GCA
[ENA]
¢þ
>WENV170008906
APHM01014576
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
652
577
-
Cys
GCA
[ENA]
¢þ
>WENV170008959
APHM01017056
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
605
681
+
Cys
GCA
[ENA]
¢þ
>WENV170009082
APHM01021179
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1432
1507
+
Cys
GCA
[ENA]
¢þ
>At0766
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
2637802
2637877
+
Cys
GCA
[Ensembl]
¡û
>WENV170659953
JXWS01054931
[JXWS] soil metagenome; rice field; elevated CO2
446
371
-
Cys
GCA
[ENA]
¢þ
>W1910228405
FNOF01000034
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
14857
14781
-
Cys
GCA
[ENA]
¡û
>W1910229774
FODV01000008
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
146366
146291
-
Cys
GCA
[ENA]
¡û
>W1910583065
JXAO01000165
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
306
381
+
Cys
GCA
[ENA]
¡û
>W1911682339
QKNY01000005
Euryarchaeota
Halonotius aquaticus F13-13 [QKNY]
177
252
+
Cys
GCA
[ENA]
¡û
>W1911696488
QMDW01000034
Euryarchaeota
Halonotius pteroides CECT 7525 [QMDW]
207
282
+
Cys
GCA
[ENA]
¡û
>W1911709460
QPLN01000002
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
974
1049
+
Cys
GCA
[ENA]
¡û
>W1911709602
QPLQ01000002
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
890069
889994
-
Cys
GCA
[ENA]
¡û
>W1911770062
QXIK01000024
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
32065
31990
-
Cys
GCA
[ENA]
¡û
>C151003927
CP002988
Euryarchaeota
halophilic archaeon DL31 [CP002988]
2126848
2126773
-
Cys
GCA
[Ensembl]
¡û
>W1610000785
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
829
904
+
Cys
GCA
[ENA]
¡û
>W1610003585
AGCX01000009
Euryarchaeota
Halonotius sp. J07HN4 [AGCX]
9431
9506
+
Cys
GCA
[ENA]
¡û
>W1610011883
AOHV01000046
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
36898
36973
+
Cys
GCA
[ENA]
¡û
>W1610014146
AOLQ01000053
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
508
584
+
Cys
GCA
[ENA]
¡û
>W1610014201
AOLR01000024
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
6555
6480
-
Cys
GCA
[ENA]
¡û
>W1610014283
AOLW01000024
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
278154
278079
-
Cys
GCA
[ENA]
¡û
>W1610014324
AOLX01000019
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
11106
11031
-
Cys
GCA
[ENA]
¡û
>W1610014400
AOLY01000039
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
487432
487354
-
Cys
GCA
[ENA]
¡û
>W1610014597
AOMD01000030
Euryarchaeota
Halococcus saccharolyticus DSM 5350 [AOMD]
122393
122468
+
Cys
GCA
[ENA]
¡û
>W1610019204
ARQA01000232
Euryarchaeota
Halonotius sp. J07HN6 [ARQA]
4537
4462
-
Cys
GCA
[ENA]
¡û
>W1610040549
BAFM01000010
Euryarchaeota
Halococcus agarilyticus 197A [BAFM]
110753
110828
+
Cys
GCA
[ENA]
¡û
>W1610061908
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
2544893
2544968
+
Cys
GCA
[ENA]
¡û
>W1610061972
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
348626
348548
-
Cys
GCA
[ENA]
¡û
>W1610881012
LRHL01000004
Euryarchaeota
Haloarcula sp. K1 [LRHL]
351
426
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK