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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.124541 (28 seq.)
>W1711116082
LUAS01000090
Betaproteobacteria
Oligella sp. HMSC09E12 [LUAS]
47375
47459
+
Leu
TAG
[ENA]
¡û
>W1711185167
LWNE01000029
Betaproteobacteria
Oligella sp. HMSC05A10 [LWNE]
7697
7613
-
Leu
TAG
[ENA]
¡û
>W131159444
AQVB01000005
Betaproteobacteria
Oligella urethralis DSM 7531 [AQVB]
102794
102878
+
Leu
TAG
[ENA]
¡û
>W141194174
AYSV01000001
Betaproteobacteria
Pelistega indica HM-7 [AYSV]
2312
2228
-
Leu
TAG
[ENA]
¡û
>WENV170717938
LSQX01055221
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1189
1105
-
Leu
TAG
[ENA]
¢þ
>WENV170719154
LSQX01103870
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3486
3402
-
Leu
TAG
[ENA]
¢þ
>WENV170720650
LSQX01160972
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2455
2371
-
Leu
TAG
[ENA]
¢þ
>WENV170721767
LSQX01203218
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
88
4
-
Leu
TAG
[ENA]
¢þ
>WENV170726912
LSQX01398646
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
74
158
+
Leu
TAG
[ENA]
¢þ
>C181049079
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
919226
919310
+
Leu
TAG
-
¡û
>C181049944
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
904739
904823
+
Leu
TAG
-
¡û
>C181049981
CP021200
Betaproteobacteria
Taylorella equigenitalis 79-1587 [CP021200]
937642
937726
+
Leu
TAG
-
¡û
>C181050018
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
905284
905368
+
Leu
TAG
-
¡û
>C181050100
CP021246
Betaproteobacteria
Taylorella equigenitalis 98-0554 [CP021246]
912974
913058
+
Leu
TAG
-
¡û
>C181152578
CP027417
Betaproteobacteria
Oligella urethralis FDAARGOS_329 [CP027417]
1598052
1598136
+
Leu
TAG
-
¡û
>C191208067
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
907305
907389
+
Leu
TAG
-
¡û
>W141560345
JHXN01000001
Betaproteobacteria
Taylorella asinigenitalis ATCC 700933 [JHXN]
129260
129344
+
Leu
TAG
[ENA]
¡û
>W1910225791
FMSW01000008
Betaproteobacteria
Pelistega sp. MC2 [FMSW]
77728
77644
-
Leu
TAG
[ENA]
¡û
>W1810701975
QMFX01000004
Betaproteobacteria
Taylorella equigenitalis 210217RC10635 [QMFX]
122976
122892
-
Leu
TAG
[ENA]
¡û
>C151046328
CP009238
Betaproteobacteria
Basilea psittacipulmonis DSM 24701 [CP009238]
522521
522437
-
Leu
TAG
[Ensembl]
¡û
>W1511350718
JRMO01000014
Betaproteobacteria
Taylorella equigenitalis MCE529 [JRMO]
134414
134498
+
Leu
TAG
[ENA]
¡û
>W1511351532
JRNI01000015
Betaproteobacteria
Oligella urethralis DNF00040 [JRNI]
7666
7582
-
Leu
TAG
[ENA]
¡û
>C11122619
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
1557467
1557551
+
Leu
TAG
[Ensembl]
¡û
>W1511458922
JVJW01000005
Betaproteobacteria
Oligella urethralis 368_TASI [JVJW]
7698
7614
-
Leu
TAG
[ENA]
¡û
>W1511461236
JVMH01000051
Betaproteobacteria
Oligella urethralis 303_AMIM [JVMH]
1690
1774
+
Leu
TAG
[ENA]
¡û
>C121004863
CP003059
Betaproteobacteria
Taylorella asinigenitalis MCE3 [CP003059]
828085
828001
-
Leu
TAG
[Ensembl]
¡û
>C121009930
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
937627
937711
+
Leu
TAG
[Ensembl]
¡û
>W1710004127
AFWK01000105
Betaproteobacteria
Basilea psittacipulmonis DSM 24701 [AFWK]
25451
25535
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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