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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.124780 (53 seq.)
>W1711293897
LZYZ01000004
Bacillota
Clostridium saccharobutylicum [LZYZ]
399401
399317
-
Tyr
GTA
[ENA]
¡û
>W1711293981
LZZA01000084
Bacillota
Clostridium saccharobutylicum [LZZA]
41349
41265
-
Tyr
GTA
[ENA]
¡û
>W1711579495
MNRT01000043
Bacillota
Clostridium sp. 29_15 [MNRT]
118313
118229
-
Tyr
GTA
[ENA]
¡û
>C171030466
CP014176
Bacillota
Clostridium argentinense 89G [CP014176]
4499860
4499776
-
Tyr
GTA
-
¡û
>C171030469
CP014176
Bacillota
Clostridium argentinense 89G [CP014176]
4499594
4499510
-
Tyr
GTA
-
¡û
>C171045604
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
547341
547425
+
Tyr
GTA
-
¡û
>C171045761
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
547952
548036
+
Tyr
GTA
-
¡û
>C171045930
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
564840
564924
+
Tyr
GTA
-
¡û
>W131044101
AMQH01000002
Bacillota
Clostridium tunisiense TJ [AMQH]
287914
287830
-
Tyr
GTA
[ENA]
¡û
>W131044104
AMQH01000002
Bacillota
Clostridium tunisiense TJ [AMQH]
287644
287560
-
Tyr
GTA
[ENA]
¡û
>W131044107
AMQH01000002
Bacillota
Clostridium tunisiense TJ [AMQH]
287374
287290
-
Tyr
GTA
[ENA]
¡û
>W131044110
AMQH01000002
Bacillota
Clostridium tunisiense TJ [AMQH]
287104
287020
-
Tyr
GTA
[ENA]
¡û
>WENV180541485
OCHR01173019
[OCHR] human gut metagenome; human gut
211
127
-
Tyr
GTA
[ENA]
¢þ
>W141063529
APJA01000006
Bacillota
Clostridium intestinale URNW [APJA]
76775
76859
+
Tyr
GTA
[ENA]
¡û
>W141063532
APJA01000006
Bacillota
Clostridium intestinale URNW [APJA]
77097
77181
+
Tyr
GTA
[ENA]
¡û
>W141082930
AUPA01000039
Bacillota
Clostridium sp. BL8 [AUPA]
389
305
-
Tyr
GTA
[ENA]
¡û
>W141082933
AUPA01000039
Bacillota
Clostridium sp. BL8 [AUPA]
111
27
-
Tyr
GTA
[ENA]
¡û
>W141082974
AUPA01000123
Bacillota
Clostridium sp. BL8 [AUPA]
1148
1064
-
Tyr
GTA
[ENA]
¡û
>W141239840
CAEV01000040
Bacillota
Clostridium senegalense JC122 [CAEV]
47242
47158
-
Tyr
GTA
[ENA]
¡û
>W141239843
CAEV01000040
Bacillota
Clostridium senegalense JC122 [CAEV]
46970
46886
-
Tyr
GTA
[ENA]
¡û
>W141261399
CCAT010000070
Bacillota
Clostridium ihumii anorexicamassiliense AP5 [CCAT]
26419
26503
+
Tyr
GTA
[ENA]
¡û
>W141261402
CCAT010000070
Bacillota
Clostridium ihumii anorexicamassiliense AP5 [CCAT]
26693
26777
+
Tyr
GTA
[ENA]
¡û
>W141261405
CCAT010000070
Bacillota
Clostridium ihumii anorexicamassiliense AP5 [CCAT]
26965
27049
+
Tyr
GTA
[ENA]
¡û
>W141265349
CCFF01000015
Bacillota
Clostridium culturomicium CL-6 [CCFF]
407361
407277
-
Tyr
GTA
[ENA]
¡û
>W141265351
CCFF01000015
Bacillota
Clostridium culturomicium CL-6 [CCFF]
407161
407077
-
Tyr
GTA
[ENA]
¡û
>W141265354
CCFF01000015
Bacillota
Clostridium culturomicium CL-6 [CCFF]
406885
406801
-
Tyr
GTA
[ENA]
¡û
>W141265357
CCFF01000015
Bacillota
Clostridium culturomicium CL-6 [CCFF]
406604
406520
-
Tyr
GTA
[ENA]
¡û
>WENV182963299
OKWQ01000074
[OKWQ] human gut metagenome; stool
131505
131589
+
Tyr
GTA
[ENA]
¢þ
>WENV183614104
OODU01026159
[OODU] human gut metagenome; human gut
548
632
+
Tyr
GTA
[ENA]
¢þ
>W141806460
JPMD01000002
Bacillota
Clostridium sulfidigenes [JPMD]
103720
103636
-
Tyr
GTA
[ENA]
¡û
>W141806463
JPMD01000002
Bacillota
Clostridium sulfidigenes [JPMD]
103433
103349
-
Tyr
GTA
[ENA]
¡û
>W141806490
JPMD01000049
Bacillota
Clostridium sulfidigenes [JPMD]
32572
32656
+
Tyr
GTA
[ENA]
¡û
>W141806493
JPMD01000049
Bacillota
Clostridium sulfidigenes [JPMD]
32860
32944
+
Tyr
GTA
[ENA]
¡û
>C141007622
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
547952
548036
+
Tyr
GTA
[Ensembl]
¡û
>W1911491718
OAOI01000057
Bacillota
Clostridium thiosulfatireducens [OAOI]
18296
18380
+
Tyr
GTA
[ENA]
¡û
>W1911491739
OAOI01000115
Bacillota
Clostridium thiosulfatireducens [OAOI]
2015
1931
-
Tyr
GTA
[ENA]
¡û
>W1510060593
CCXK01000015
Bacillota
Clostridium culturomicium CL-6 [CCXK]
407361
407277
-
Tyr
GTA
[ENA]
¡û
>W1510060595
CCXK01000015
Bacillota
Clostridium culturomicium CL-6 [CCXK]
407161
407077
-
Tyr
GTA
[ENA]
¡û
>W1510060598
CCXK01000015
Bacillota
Clostridium culturomicium CL-6 [CCXK]
406885
406801
-
Tyr
GTA
[ENA]
¡û
>W1510060601
CCXK01000015
Bacillota
Clostridium culturomicium CL-6 [CCXK]
406604
406520
-
Tyr
GTA
[ENA]
¡û
>W1610030390
AYSO01000019
Bacillota
Clostridium argentinense CDC 2741 [AYSO]
216451
216535
+
Tyr
GTA
[ENA]
¡û
>W1610030616
AYXL01000174
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
38871
38787
-
Tyr
GTA
[ENA]
¡û
>W1610604778
LFRG01000035
Bacillota
Clostridium sp. ATCC 25772 [LFRG]
16034
15950
-
Tyr
GTA
[ENA]
¡û
>W1610604781
LFRG01000035
Bacillota
Clostridium sp. ATCC 25772 [LFRG]
15755
15671
-
Tyr
GTA
[ENA]
¡û
>W1710027513
AYSO01000019
Bacillota
Clostridium argentinense CDC 2741 [AYSO]
216451
216535
+
Tyr
GTA
[ENA]
¡û
>W1710027739
AYXL01000174
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
38871
38787
-
Tyr
GTA
[ENA]
¡û
>W1710561810
FOOL01000001
Bacillota
Clostridium homopropionicum [FOOL]
226979
227063
+
Tyr
GTA
[ENA]
¡û
>W1710561812
FOOL01000001
Bacillota
Clostridium homopropionicum [FOOL]
227194
227278
+
Tyr
GTA
[ENA]
¡û
>W1710587178
FQXU01000018
Bacillota
Clostridium intestinale DSM 6191 [FQXU]
204
120
-
Tyr
GTA
[ENA]
¡û
>W1710588054
FQZB01000006
Bacillota
Clostridium cavendishii DSM 21758 [FQZB]
348037
347953
-
Tyr
GTA
[ENA]
¡û
>W1710588091
FQZB01000022
Bacillota
Clostridium cavendishii DSM 21758 [FQZB]
249
165
-
Tyr
GTA
[ENA]
¡û
>W1710589426
FRAD01000026
Bacillota
Hathewaya proteolytica DSM 3090 [FRAD]
34720
34804
+
Tyr
GTA
[ENA]
¡û
>W1710589428
FRAD01000026
Bacillota
Hathewaya proteolytica DSM 3090 [FRAD]
34899
34983
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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