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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.124996 (11 seq.)
>A171002431
CP002838
Thermoproteota
Pyrolobus fumarii 1A [CP002838]
1074570
1074492
-
Gly
TCC
-
¡û
>A171003238
CP003531
Thermoproteota
Thermogladius calderae 1633 [CP003531]
549928
550004
+
Gly
TCC
-
¡û
>A171006435
CP013011
Thermoproteota
Pyrodictium delaneyi Su06 [CP013011]
2015769
2015847
+
Gly
TCC
-
¡û
>A171006449
CP013011
Thermoproteota
Pyrodictium delaneyi Su06 [CP013011]
158072
157994
-
Gly
CCC
-
¡û
>WENV180275585
OBHT01073961
[OBHT] metagenome; hydrothermal vent
90
12
-
Gly
TCC
[ENA]
¢þ
>WENV181285421
OFGS01000312
[OFGS] hot springs metagenome; Water and soil
8100
8175
+
Gly
TCC
[ENA]
¢þ
>WENV181404349
OGCA01000463
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
48
126
+
Gly
GCC
[ENA]
¢þ
>WENV181404835
OGCB01000560
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
9196
9274
+
Gly
TCC
[ENA]
¢þ
>WENV181404935
OGCB01002483
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
2524
2446
-
Gly
GCC
[ENA]
¢þ
>At2219
CP000816
Thermoproteota
Ignicoccus hospitalis KIN4/I [CP000816]
1290865
1290787
-
Gly
TCC
[Ensembl]
¡û
>W1910015311
BDMD01000056
Thermoproteota
Aeropyrum pernix YK1-12-2013 [BDMD]
8173
8251
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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