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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.125105 (131 seq.)
>W1710890870
LNCD01000140
Alphaproteobacteria
Rhizobium altiplani BR10423 [LNCD]
106068
106152
+
Leu
CAG
[ENA]
¡û
>W1710908944
LNQB01000036
Alphaproteobacteria
Sinorhizobium saheli [LNQB]
7740
7656
-
Leu
CAG
[ENA]
¡û
>W1710909029
LNQC01000077
Alphaproteobacteria
Sinorhizobium americanum [LNQC]
110450
110534
+
Leu
CAG
[ENA]
¡û
>W1710935941
LOKW01000003
Alphaproteobacteria
Rhizobium sp. R634 [LOKW]
52152
52236
+
Leu
CAG
[ENA]
¡û
>W1710936018
LOKX01000033
Alphaproteobacteria
Rhizobium sp. R635 [LOKX]
98050
97966
-
Leu
CAG
[ENA]
¡û
>W1710936053
LOKY01000012
Alphaproteobacteria
Rhizobium sp. R693 [LOKY]
382747
382663
-
Leu
CAG
[ENA]
¡û
>W1710987726
LPUX01000053
Alphaproteobacteria
Sinorhizobium glycinis [LPUX]
1263286
1263202
-
Leu
CAG
[ENA]
¡û
>W1711120270
LUFU01000008
Alphaproteobacteria
Ensifer aridi [LUFU]
137581
137665
+
Leu
CAG
[ENA]
¡û
>W1711120319
LUFV01000007
Alphaproteobacteria
Ensifer aridi [LUFV]
437
521
+
Leu
CAG
[ENA]
¡û
>W1711120368
LUFW01000013
Alphaproteobacteria
Ensifer aridi [LUFW]
40523
40607
+
Leu
CAG
[ENA]
¡û
>W1711120420
LUFX01000009
Alphaproteobacteria
Ensifer aridi [LUFX]
40610
40694
+
Leu
CAG
[ENA]
¡û
>W1711233473
LYBW01000060
Alphaproteobacteria
Sinorhizobium alkalisoli YIC4027 [LYBW]
569163
569079
-
Leu
CAG
[ENA]
¡û
>W1711253095
LYPK01000004
Alphaproteobacteria
Rhizobium bangladeshense [LYPK]
183370
183286
-
Leu
CAG
[ENA]
¡û
>W1711253127
LYPL01000001
Alphaproteobacteria
Rhizobium bangladeshense [LYPL]
595728
595812
+
Leu
CAG
[ENA]
¡û
>W1711253191
LYPM01000004
Alphaproteobacteria
Rhizobium aegyptiacum [LYPM]
215709
215625
-
Leu
CAG
[ENA]
¡û
>W1711253240
LYPN01000003
Alphaproteobacteria
Rhizobium bangladeshense [LYPN]
334163
334247
+
Leu
CAG
[ENA]
¡û
>W1711283479
LZPI01000004
Alphaproteobacteria
Rhizobium sp. YK2 [LZPI]
196539
196455
-
Leu
CAG
[ENA]
¡û
>W1711353276
MDDV01000057
Alphaproteobacteria
Ensifer sp. LCM 4579 [MDDV]
14734
14818
+
Leu
CAG
[ENA]
¡û
>W1711353320
MDDW01000013
Alphaproteobacteria
Rhizobium sp. LCM 4573 [MDDW]
77232
77316
+
Leu
CAG
[ENA]
¡û
>W1711489155
MKIO01000028
Alphaproteobacteria
Xaviernesmea rhizosphaerae MH17 [MKIO]
17628
17544
-
Leu
CAG
[ENA]
¡û
>W1711489156
MKIO01000028
Alphaproteobacteria
Xaviernesmea rhizosphaerae MH17 [MKIO]
17330
17246
-
Leu
CAG
[ENA]
¡û
>W1711489212
MKIP01000053
Alphaproteobacteria
Xaviernesmea oryzae [MKIP]
178777
178693
-
Leu
CAG
[ENA]
¡û
>W1711489213
MKIP01000053
Alphaproteobacteria
Xaviernesmea oryzae [MKIP]
178455
178371
-
Leu
CAG
[ENA]
¡û
>W1711667366
MRDK01000067
Alphaproteobacteria
Rhizobium sophorae [MRDK]
3180
3264
+
Leu
CAG
[ENA]
¡û
>W1711704846
MSPX01000014
Alphaproteobacteria
Xaviernesmea rhizosphaerae [MSPX]
80261
80345
+
Leu
CAG
[ENA]
¡û
>W1711704847
MSPX01000014
Alphaproteobacteria
Xaviernesmea rhizosphaerae [MSPX]
80560
80644
+
Leu
CAG
[ENA]
¡û
>C171019681
CP013051
Alphaproteobacteria
Sinorhizobium americanum CCGM7 [CP013051]
264030
263946
-
Leu
CAG
-
¡û
>C171114508
CP020896
Alphaproteobacteria
Rhizobium phaseoli Brasil 5 [CP020896]
255633
255549
-
Leu
CAG
-
¡û
>C171114645
CP020906
Alphaproteobacteria
Rhizobium etli NXC12 [CP020906]
246062
245978
-
Leu
CAG
-
¡û
>C171115120
CP021030
Alphaproteobacteria
Rhizobium sp. NXC14 [CP021030]
247351
247267
-
Leu
CAG
-
¡û
>W131163295
AQZQ01000002
Alphaproteobacteria
Ensifer sp. BR816 BR816 [AQZQ]
24035
23951
-
Leu
CAG
[ENA]
¡û
>W131173646
ARHV01000002
Alphaproteobacteria
Rhizobium sp. 42MFCr.1 [ARHV]
265766
265682
-
Leu
CAG
[ENA]
¡û
>W131242249
CANI01000034
Alphaproteobacteria
Rhizobium mesoamericanum STM3625 [CANI]
83084
83168
+
Leu
CAG
[ENA]
¡û
>W141065125
AQHN01000006
Alphaproteobacteria
Rhizobium freirei PRF 81 [AQHN]
1035
951
-
Leu
CAG
[ENA]
¡û
>W08010471
ABQZ01001189
Alphaproteobacteria
Rhizobium phaseoli Brasil 5 [ABQZ]
214
133
-
Leu
CAG
[ENA]
¡û
>W141207488
AZNV01000010
Alphaproteobacteria
Rhizobium sp. IBUN [AZNV]
105083
105167
+
Leu
CAG
[ENA]
¡û
>W141207578
AZNX01000001
Alphaproteobacteria
Ensifer aridi TW10 [AZNX]
1279711
1279627
-
Leu
CAG
[ENA]
¡û
>WENV170561441
CZCA01009425
[CZCA] anaerobic digester metagenome; anaerobic digester
738
822
+
Leu
CAG
[ENA]
¢þ
>W141461494
JFGO01000005
Alphaproteobacteria
Sinorhizobium americanum CCGM7 [JFGO]
29680
29596
-
Leu
CAG
[ENA]
¡û
>W141461588
JFGP01000005
Alphaproteobacteria
Rhizobium leguminosarum bv. phaseoli CCGM1 [JFGP]
677955
677871
-
Leu
CAG
[ENA]
¡û
>C181074770
CP022998
Alphaproteobacteria
Rhizobium sp. 11515TR [CP022998]
946816
946732
-
Leu
CAG
-
¡û
>C181075735
CP023063
Alphaproteobacteria
Sinorhizobium sp. CCBAU 05631 [CP023063]
3909360
3909276
-
Leu
CAG
-
¡û
>C181075785
CP023067
Alphaproteobacteria
Sinorhizobium sojae CCBAU 05684 [CP023067]
3571914
3571998
+
Leu
CAG
-
¡û
>C181075837
CP023070
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83666 [CP023070]
3855311
3855395
+
Leu
CAG
-
¡û
>C181099231
CP024307
Alphaproteobacteria
Sinorhizobium fredii NXT3 [CP024307]
265238
265154
-
Leu
CAG
-
¡û
>C181099283
CP024311
Alphaproteobacteria
Rhizobium sp. NXC24 [CP024311]
303475
303391
-
Leu
CAG
-
¡û
>C181176257
CP029231
Alphaproteobacteria
Sinorhizobium fredii CCBAU 45436 [CP029231]
4045695
4045779
+
Leu
CAG
-
¡û
>C181178638
CP029451
Alphaproteobacteria
Sinorhizobium fredii CCBAU 25509 [CP029451]
4084240
4084324
+
Leu
CAG
-
¡û
>C191093782
CP032694
Alphaproteobacteria
Rhizobium jaguaris CCGE525 [CP032694]
380010
379926
-
Leu
CAG
-
¡û
>W1910182991
BJNI01000029
Alphaproteobacteria
Sinorhizobium fredii NBRC 14780 [BJNI]
40415
40499
+
Leu
CAG
[ENA]
¡û
>W1910636537
LODU01000047
Alphaproteobacteria
Sinorhizobium americanum FG01 [LODU]
115708
115624
-
Leu
CAG
[ENA]
¡û
>W1910636579
LODV01000012
Alphaproteobacteria
Sinorhizobium americanum NG07B [LODV]
115850
115766
-
Leu
CAG
[ENA]
¡û
>C09108779
CP001389
Alphaproteobacteria
Sinorhizobium fredii NGR234 [CP001389]
3809830
3809914
+
Leu
CAG
[Ensembl]
¡û
>W1910658193
MBFK01000061
Alphaproteobacteria
Sinorhizobium shofinae CCBAU 251167 [MBFK]
169176
169092
-
Leu
CAG
[ENA]
¡û
>W1910831861
MXPU01000001
Alphaproteobacteria
Rhizobium esperanzae CNPSo 668 [MXPU]
344854
344938
+
Leu
CAG
[ENA]
¡û
>W1910840582
MZZZ01000005
Alphaproteobacteria
Rhizobium phaseoli CCGM8 [MZZZ]
94643
94559
-
Leu
CAG
[ENA]
¡û
>W1911408857
NWSI01000024
Alphaproteobacteria
Rhizobium phaseoli Y20 [NWSI]
94821
94905
+
Leu
CAG
[ENA]
¡û
>W1911409101
NWSO01000001
Alphaproteobacteria
Rhizobium phaseoli Y18 [NWSO]
226951
226867
-
Leu
CAG
[ENA]
¡û
>W1911409169
NWSP01000026
Alphaproteobacteria
Rhizobium phaseoli NC1 [NWSP]
79578
79662
+
Leu
CAG
[ENA]
¡û
>W1911409285
NWST01000003
Alphaproteobacteria
Rhizobium sp. H4 [NWST]
6858
6774
-
Leu
CAG
[ENA]
¡û
>W1911409342
NWSU01000015
Alphaproteobacteria
Rhizobium sp. S9 [NWSU]
189551
189635
+
Leu
CAG
[ENA]
¡û
>W1911409437
NWSW01000046
Alphaproteobacteria
Rhizobium sp. M1 [NWSW]
13035
13119
+
Leu
CAG
[ENA]
¡û
>W1911409562
NWSZ01000013
Alphaproteobacteria
Rhizobium sp. L9 [NWSZ]
231540
231624
+
Leu
CAG
[ENA]
¡û
>W1911409621
NWTA01000041
Alphaproteobacteria
Rhizobium sp. M10 [NWTA]
13252
13168
-
Leu
CAG
[ENA]
¡û
>W1911409640
NWTB01000005
Alphaproteobacteria
Sinorhizobium sp. FG01 [NWTB]
115708
115624
-
Leu
CAG
[ENA]
¡û
>W1911409675
NWTC01000005
Alphaproteobacteria
Sinorhizobium fredii PCH1 [NWTC]
186908
186992
+
Leu
CAG
[ENA]
¡û
>W1911409744
NWTD01000001
Alphaproteobacteria
Sinorhizobium sp. NG07B [NWTD]
115850
115766
-
Leu
CAG
[ENA]
¡û
>W1911409936
NWTH01000001
Alphaproteobacteria
Sinorhizobium sp. BJ1 [NWTH]
118400
118484
+
Leu
CAG
[ENA]
¡û
>W1911421166
NXDM01000011
Alphaproteobacteria
Rhizobium sophoriradicis L101 [NXDM]
243640
243724
+
Leu
CAG
[ENA]
¡û
>W1911421228
NXDN01000025
Alphaproteobacteria
Rhizobium sophoriradicis JJW1 [NXDN]
68548
68632
+
Leu
CAG
[ENA]
¡û
>W1810403806
PYJQ01000001
Alphaproteobacteria
Rhizobium sp. JAB6 [PYJQ]
249948
249864
-
Leu
CAG
[ENA]
¡û
>W1810659790
QJKM01000008
Alphaproteobacteria
Rhizobium terrae NAU-18 [QJKM]
159003
159087
+
Leu
CAG
[ENA]
¡û
>W1810706805
QMKK01000046
Alphaproteobacteria
Rhizobium tropici IGFRI Rhizo-19 [QMKK]
24995
24911
-
Leu
CAG
[ENA]
¡û
>W1810758743
QPIX01000007
Alphaproteobacteria
Ciceribacter lividus DSM 25528 [QPIX]
138589
138673
+
Leu
CAG
[ENA]
¡û
>C151015752
CP006986
Alphaproteobacteria
Rhizobium sp. IE4771 [CP006986]
266754
266670
-
Leu
CAG
[Ensembl]
¡û
>C151030892
CP007641
Alphaproteobacteria
Rhizobium etli bv. phaseoli str. IE4803 [CP007641]
266188
266104
-
Leu
CAG
[Ensembl]
¡û
>W1511318799
JPYQ01000001
Alphaproteobacteria
Rhizobium sp. YS-1r [JPYQ]
538635
538719
+
Leu
CAG
[ENA]
¡û
>W1511399932
JTGD01000069
Alphaproteobacteria
Mesorhizobium sp. F7 [JTGD]
82999
82915
-
Leu
CAG
[ENA]
¡û
>W1511582701
LATE01000135
Alphaproteobacteria
Sinorhizobium sp. PC2 [LATE]
410097
410013
-
Leu
CAG
[ENA]
¡û
>C121014597
CP003563
Alphaproteobacteria
Sinorhizobium fredii USDA 257 [CP003563]
6364191
6364275
+
Leu
CAG
[Ensembl]
¡û
>C121018143
HE616890
Alphaproteobacteria
Sinorhizobium fredii HH103 [HE616890]
4168672
4168756
+
Leu
CAG
[Ensembl]
¡û
>C161056527
CP013495
Alphaproteobacteria
Rhizobium sp. N621 [CP013495]
284896
284812
-
Leu
CAG
-
¡û
>C161056578
CP013500
Alphaproteobacteria
Rhizobium esperanzae N561 [CP013500]
261149
261065
-
Leu
CAG
-
¡û
>C161056629
CP013505
Alphaproteobacteria
Rhizobium sp. N1341 [CP013505]
261191
261107
-
Leu
CAG
-
¡û
>C161056680
CP013511
Alphaproteobacteria
Rhizobium sp. N1314 [CP013511]
261848
261764
-
Leu
CAG
-
¡û
>C161056731
CP013517
Alphaproteobacteria
Rhizobium sp. N113 [CP013517]
261191
261107
-
Leu
CAG
[Ensembl]
¡û
>C161056782
CP013522
Alphaproteobacteria
Rhizobium phaseoli R744 [CP013522]
291924
291840
-
Leu
CAG
-
¡û
>C161056833
CP013527
Alphaproteobacteria
Rhizobium phaseoli R723 [CP013527]
294129
294045
-
Leu
CAG
-
¡û
>C161056883
CP013532
Alphaproteobacteria
Rhizobium phaseoli R650 [CP013532]
292886
292802
-
Leu
CAG
-
¡û
>C161056934
CP013537
Alphaproteobacteria
Rhizobium phaseoli R630 [CP013537]
292630
292546
-
Leu
CAG
[Ensembl]
¡û
>C161056985
CP013542
Alphaproteobacteria
Rhizobium phaseoli R620 [CP013542]
291511
291427
-
Leu
CAG
-
¡û
>C161057035
CP013547
Alphaproteobacteria
Rhizobium phaseoli R611 [CP013547]
292886
292802
-
Leu
CAG
-
¡û
>C161057086
CP013552
Alphaproteobacteria
Rhizobium phaseoli N931 [CP013552]
294528
294444
-
Leu
CAG
-
¡û
>C161057137
CP013557
Alphaproteobacteria
Rhizobium phaseoli N841 [CP013557]
295639
295555
-
Leu
CAG
-
¡û
>C161057188
CP013563
Alphaproteobacteria
Rhizobium phaseoli N831 [CP013563]
294528
294444
-
Leu
CAG
-
¡û
>C161057240
CP013568
Alphaproteobacteria
Rhizobium phaseoli N771 [CP013568]
293012
292928
-
Leu
CAG
-
¡û
>C161057292
CP013574
Alphaproteobacteria
Rhizobium phaseoli N671 [CP013574]
292865
292781
-
Leu
CAG
[Ensembl]
¡û
>C161057394
CP013585
Alphaproteobacteria
Rhizobium phaseoli N161 [CP013585]
295788
295704
-
Leu
CAG
-
¡û
>C161057496
CP013595
Alphaproteobacteria
Rhizobium sp. N741 [CP013595]
261191
261107
-
Leu
CAG
[Ensembl]
¡û
>C161057547
CP013601
Alphaproteobacteria
Rhizobium sp. N731 [CP013601]
261848
261764
-
Leu
CAG
-
¡û
>C161090415
CP015736
Alphaproteobacteria
Shinella sp. HZN7 [CP015736]
4466020
4465936
-
Leu
CAG
[Ensembl]
¡û
>W121033680
AHJU01000116
Alphaproteobacteria
Rhizobium phaseoli Ch24-10 [AHJU]
12404
12488
+
Leu
CAG
[ENA]
¡û
>W121066013
AJQM01000182
Alphaproteobacteria
Sinorhizobium fredii CCBAU 05557 [AJQM]
44265
44349
+
Leu
CAG
[ENA]
¡û
>W121066067
AJQN01000216
Alphaproteobacteria
Sinorhizobium fredii CCBAU 25509 [AJQN]
29762
29846
+
Leu
CAG
[ENA]
¡û
>W121066134
AJQO01000256
Alphaproteobacteria
Sinorhizobium fredii CCBAU 45436 [AJQO]
15813
15729
-
Leu
CAG
[ENA]
¡û
>W121066201
AJQQ01000041
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83643 [AJQQ]
63270
63354
+
Leu
CAG
[ENA]
¡û
>W121066342
AJQT01000031
Alphaproteobacteria
Sinorhizobium sojae CCBAU 05684 [AJQT]
7349
7433
+
Leu
CAG
[ENA]
¡û
>W121066401
AJQU01000076
Alphaproteobacteria
Sinorhizobium sp. CCBAU 05631 [AJQU]
19310
19394
+
Leu
CAG
[ENA]
¡û
>W121086567
AKKA01000080
Alphaproteobacteria
Rhizobium sp. CF122 [AKKA]
24282
24366
+
Leu
CAG
[ENA]
¡û
>W1610024812
AUTC01000142
Alphaproteobacteria
Sinorhizobium fredii USDA 205 [AUTC]
24389
24305
-
Leu
CAG
[ENA]
¡û
>C131002073
CP003123
Alphaproteobacteria
Bartonella australis AUST/NH1 [CP003123]
1180945
1181029
+
Leu
CAG
[Ensembl]
¡û
>W1610514344
FMAC01000016
Alphaproteobacteria
Rhizobium hainanense [FMAC]
94792
94876
+
Leu
CAG
[ENA]
¡û
>W1610514520
FMAG01000005
Alphaproteobacteria
Rhizobium multihospitium [FMAG]
160251
160167
-
Leu
CAG
[ENA]
¡û
>W1610514657
FMAJ01000003
Alphaproteobacteria
Rhizobium aethiopicum HBR26 [FMAJ]
343044
343128
+
Leu
CAG
[ENA]
¡û
>W1610751266
LNCD01000140
Alphaproteobacteria
Rhizobium altiplani BR10423 [LNCD]
106068
106152
+
Leu
CAG
[ENA]
¡û
>W1610767303
LNQB01000036
Alphaproteobacteria
Sinorhizobium saheli [LNQB]
7740
7656
-
Leu
CAG
[ENA]
¡û
>W1610767388
LNQC01000077
Alphaproteobacteria
Sinorhizobium americanum [LNQC]
110450
110534
+
Leu
CAG
[ENA]
¡û
>W1610842670
LPUX01000053
Alphaproteobacteria
Sinorhizobium glycinis [LPUX]
1263286
1263202
-
Leu
CAG
[ENA]
¡û
>W1611017632
LYPK01000004
Alphaproteobacteria
Rhizobium bangladeshense [LYPK]
183370
183286
-
Leu
CAG
[ENA]
¡û
>W1611017664
LYPL01000001
Alphaproteobacteria
Rhizobium bangladeshense [LYPL]
595728
595812
+
Leu
CAG
[ENA]
¡û
>W1611017728
LYPM01000004
Alphaproteobacteria
Rhizobium aegyptiacum [LYPM]
215709
215625
-
Leu
CAG
[ENA]
¡û
>W1611017777
LYPN01000003
Alphaproteobacteria
Rhizobium bangladeshense [LYPN]
334163
334247
+
Leu
CAG
[ENA]
¡û
>W1710021253
AUTC01000142
Alphaproteobacteria
Sinorhizobium fredii USDA 205 [AUTC]
24389
24305
-
Leu
CAG
[ENA]
¡û
>W1710500034
FMAC01000016
Alphaproteobacteria
Rhizobium hainanense [FMAC]
94792
94876
+
Leu
CAG
[ENA]
¡û
>W1710500210
FMAG01000005
Alphaproteobacteria
Rhizobium multihospitium [FMAG]
160251
160167
-
Leu
CAG
[ENA]
¡û
>W1710500347
FMAJ01000003
Alphaproteobacteria
Rhizobium aethiopicum HBR26 [FMAJ]
343044
343128
+
Leu
CAG
[ENA]
¡û
>W1710543977
FOAM01000004
Alphaproteobacteria
Xaviernesmea oryzae [FOAM]
192603
192687
+
Leu
CAG
[ENA]
¡û
>W1710543978
FOAM01000004
Alphaproteobacteria
Xaviernesmea oryzae [FOAM]
192925
193009
+
Leu
CAG
[ENA]
¡û
>W1710595642
FTMB01000003
Alphaproteobacteria
Rhizobium sp. RU20A [FTMB]
205692
205776
+
Leu
CAG
[ENA]
¡û
>W1710596600
FTMR01000011
Alphaproteobacteria
Rhizobium sp. RU35A [FTMR]
50513
50597
+
Leu
CAG
[ENA]
¡û
>W1710607664
FXAF01000008
Alphaproteobacteria
Xaviernesmea oryzae [FXAF]
36620
36536
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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