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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12518 (109 seq.)
>W1710861070
LMDJ01000012
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
84000
83908
-
Ser
GCT
[ENA]
¡û
>W1710871772
LMLM01000002
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
509
417
-
Ser
GCT
[ENA]
¡û
>W1710874738
LMNW01000003
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
276492
276584
+
Ser
GCT
[ENA]
¡û
>W1710890876
LNCE01000004
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
16607
16699
+
Ser
GCT
[ENA]
¡û
>W1710924026
LOCQ01000057
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
244491
244399
-
Ser
GCT
[ENA]
¡û
>W1711033331
LRHV01000008
Betaproteobacteria
Duganella sp. HH105 [LRHV]
258139
258231
+
Ser
GCT
[ENA]
¡û
>W1711033424
LRHW01000083
Betaproteobacteria
Janthinobacterium lividum [LRHW]
239636
239544
-
Ser
GCT
[ENA]
¡û
>W1711033447
LRHX01000006
Betaproteobacteria
Janthinobacterium sp. MP5059B [LRHX]
15694
15786
+
Ser
GCT
[ENA]
¡û
>W1711033504
LRHY01000018
Betaproteobacteria
Janthinobacterium sp. HH100 [LRHY]
18597
18689
+
Ser
GCT
[ENA]
¡û
>W1711033575
LRHZ01000005
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
18669
18761
+
Ser
GCT
[ENA]
¡û
>W1711033650
LRIA01000068
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
18597
18689
+
Ser
GCT
[ENA]
¡û
>W1711033723
LRIB01000043
Betaproteobacteria
Janthinobacterium sp. HH104 [LRIB]
15618
15710
+
Ser
GCT
[ENA]
¡û
>W1711033766
LRIC01000027
Betaproteobacteria
Janthinobacterium sp. HH106 [LRIC]
144903
144811
-
Ser
GCT
[ENA]
¡û
>W1711033811
LRID01000056
Betaproteobacteria
Janthinobacterium sp. HH107 [LRID]
21177
21269
+
Ser
GCT
[ENA]
¡û
>W1711046633
LROM01000122
Betaproteobacteria
Duganella phyllosphaerae [LROM]
871
779
-
Ser
GCT
[ENA]
¡û
>W1711046677
LRON01000006
Betaproteobacteria
Duganella sp. HH101 [LRON]
12490
12398
-
Ser
GCT
[ENA]
¡û
>W1711308639
MAQB02000009
Betaproteobacteria
Janthinobacterium lividum [MAQB]
173230
173138
-
Ser
GCT
[ENA]
¡û
>W1712004445
NEGX01000011
Betaproteobacteria
Janthinobacterium sp. GW460W [NEGX]
77901
77993
+
Ser
GCT
[ENA]
¡û
>W1712004503
NEGY01000004
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
77822
77914
+
Ser
GCT
[ENA]
¡û
>W1712004647
NEGZ01000069
Betaproteobacteria
Janthinobacterium sp. GW458P [NEGZ]
19962
20054
+
Ser
GCT
[ENA]
¡û
>W1712004659
NEHA01000004
Betaproteobacteria
Janthinobacterium sp. GW456W [NEHA]
77843
77935
+
Ser
GCT
[ENA]
¡û
>W1712004762
NEHB01000009
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
77826
77918
+
Ser
GCT
[ENA]
¡û
>C171010533
CP011319
Betaproteobacteria
Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319]
3899921
3899829
-
Ser
GCT
-
¡û
>C171094984
CP019510
Betaproteobacteria
Janthinobacterium sp. LM6 [CP019510]
2460178
2460270
+
Ser
GCT
-
¡û
>W131050098
AMWD01000001
Betaproteobacteria
Janthinobacterium sp. HH01 [AMWD]
2861828
2861920
+
Ser
GCT
[ENA]
¡û
>W131176177
ARJV01000023
Betaproteobacteria
Duganella zoogloeoides ATCC 25935 [ARJV]
313970
314062
+
Ser
GCT
[ENA]
¡û
>W131179111
ARMC01000031
Betaproteobacteria
Oxalobacteraceae bacterium AB_14 [ARMC]
527171
527263
+
Ser
GCT
[ENA]
¡û
>WENV180016362
FSUS01000321
[FSUS] metagenome; soil
4987
4895
-
Ser
GCT
[ENA]
¢þ
>WENV180018493
FSZM01000081
[FSZM] metagenome; soil
15153
15061
-
Ser
GCT
[ENA]
¢þ
>WENV180019271
FTBS01000310
[FTBS] metagenome; soil
1828
1736
-
Ser
GCT
[ENA]
¢þ
>WENV180024859
FTIJ01202711
[FTIJ] metagenome; soil
88
180
+
Ser
GCT
[ENA]
¢þ
>WENV180024861
FTIJ01216994
[FTIJ] metagenome; soil
101
193
+
Ser
GCT
[ENA]
¢þ
>WENV180025725
FTIQ01001780
[FTIQ] metagenome; soil
1688
1596
-
Ser
GCT
[ENA]
¢þ
>WENV180035318
FTKT01179616
[FTKT] metagenome; soil
98
6
-
Ser
GCT
[ENA]
¢þ
>W141484482
JFYR01000034
Betaproteobacteria
Janthinobacterium lividum [JFYR]
33838
33930
+
Ser
GCT
[ENA]
¡û
>C181081121
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
2583569
2583661
+
Ser
GCT
-
¡û
>C191098117
CP033019
Betaproteobacteria
Janthinobacterium agaricidamnosum BHSEK [CP033019]
1865490
1865582
+
Ser
GCT
-
¡û
>C191188121
CP041185
Betaproteobacteria
Janthinobacterium tructae SNU WT3 [CP041185]
37364
37456
+
Ser
GCT
-
¡û
>W141821494
JQNP01000001
Betaproteobacteria
Janthinobacterium sp. RA13 [JQNP]
116035
116127
+
Ser
GCT
[ENA]
¡û
>W1910942573
NJGY01000003
Betaproteobacteria
Janthinobacterium sp. PC23-8 [NJGY]
203186
203278
+
Ser
GCT
[ENA]
¡û
>W1911199888
NRDQ01000104
Betaproteobacteria
Janthinobacterium sp. AD80 [NRDQ]
12910
13002
+
Ser
GCT
[ENA]
¡û
>W1810062445
PDOC01000015
Betaproteobacteria
Massilia eurypsychrophila JCM 30074 [PDOC]
378
286
-
Ser
GCT
[ENA]
¡û
>W1810068191
PDZI01000012
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
189244
189336
+
Ser
GCT
[ENA]
¡û
>W1810068229
PDZJ01000001
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
522337
522429
+
Ser
GCT
[ENA]
¡û
>W1810068310
PDZK01000001
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
546093
546185
+
Ser
GCT
[ENA]
¡û
>W1810068446
PDZL01000029
Betaproteobacteria
Janthinobacterium sp. BJB426 [PDZL]
36564
36472
-
Ser
GCT
[ENA]
¡û
>W1810068504
PDZM01000007
Betaproteobacteria
Janthinobacterium sp. BJB312 [PDZM]
416904
416996
+
Ser
GCT
[ENA]
¡û
>W1810068554
PDZN01000003
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
269543
269451
-
Ser
GCT
[ENA]
¡û
>W1810068687
PDZO02000030
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
140
48
-
Ser
GCT
[ENA]
¡û
>W1810068736
PDZP01000009
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
260723
260631
-
Ser
GCT
[ENA]
¡û
>W1810068737
PDZP01000009
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
257918
257826
-
Ser
GCT
[ENA]
¡û
>W1810069738
PEBS01000012
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
89732
89640
-
Ser
GCT
[ENA]
¡û
>W1810071340
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
910814
910722
-
Ser
GCT
[ENA]
¡û
>W1810072838
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
485426
485334
-
Ser
GCT
[ENA]
¡û
>W1810089369
PGES01000001
Betaproteobacteria
Janthinobacterium sp. 67 [PGES]
191072
191164
+
Ser
GCT
[ENA]
¡û
>W1810121288
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
5946154
5946246
+
Ser
GCT
[ENA]
¡û
>W1810172790
PJMQ01000001
Betaproteobacteria
Janthinobacterium sp. 61 [PJMQ]
547934
548026
+
Ser
GCT
[ENA]
¡û
>W1810486569
QAXZ01000001
Betaproteobacteria
Massilia sp. GV045 [QAXZ]
39838
39930
+
Ser
GCT
[ENA]
¡û
>W1810487111
QAYI01000003
Betaproteobacteria
Massilia sp. GV016 [QAYI]
86569
86477
-
Ser
GCT
[ENA]
¡û
>W1810576783
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
2516331
2516423
+
Ser
GCT
[ENA]
¡û
>W1810672482
QJTL01000005
Betaproteobacteria
Duganella sp. GV083 [QJTL]
290877
290785
-
Ser
GCT
[ENA]
¡û
>W1810672483
QJTL01000005
Betaproteobacteria
Duganella sp. GV083 [QJTL]
290537
290445
-
Ser
GCT
[ENA]
¡û
>W1810672598
QJTN01000003
Betaproteobacteria
Massilia sp. GV024 [QJTN]
86569
86477
-
Ser
GCT
[ENA]
¡û
>W1810677190
QKMN01000005
Betaproteobacteria
Duganella sp. GV053 [QKMN]
290877
290785
-
Ser
GCT
[ENA]
¡û
>W1810677191
QKMN01000005
Betaproteobacteria
Duganella sp. GV053 [QKMN]
290537
290445
-
Ser
GCT
[ENA]
¡û
>W1810693426
QLLJ01000005
Betaproteobacteria
Duganella sp. GV066 [QLLJ]
290877
290785
-
Ser
GCT
[ENA]
¡û
>W1810693427
QLLJ01000005
Betaproteobacteria
Duganella sp. GV066 [QLLJ]
290537
290445
-
Ser
GCT
[ENA]
¡û
>W1810694388
QLLZ01000005
Betaproteobacteria
Duganella sp. GV039 [QLLZ]
290877
290785
-
Ser
GCT
[ENA]
¡û
>W1810694389
QLLZ01000005
Betaproteobacteria
Duganella sp. GV039 [QLLZ]
290537
290445
-
Ser
GCT
[ENA]
¡û
>W1810787989
QREC01000005
Betaproteobacteria
Duganella sp. GV023 [QREC]
290877
290785
-
Ser
GCT
[ENA]
¡û
>W1810787990
QREC01000005
Betaproteobacteria
Duganella sp. GV023 [QREC]
290537
290445
-
Ser
GCT
[ENA]
¡û
>W1810885079
QUNB01000004
Betaproteobacteria
Duganella sp. GV032 [QUNB]
290877
290785
-
Ser
GCT
[ENA]
¡û
>W1810885080
QUNB01000004
Betaproteobacteria
Duganella sp. GV032 [QUNB]
290537
290445
-
Ser
GCT
[ENA]
¡û
>W1810885203
QUND01000005
Betaproteobacteria
Duganella sp. GV046 [QUND]
290877
290785
-
Ser
GCT
[ENA]
¡û
>W1810885204
QUND01000005
Betaproteobacteria
Duganella sp. GV046 [QUND]
290537
290445
-
Ser
GCT
[ENA]
¡û
>W1810885837
QUNP01000005
Betaproteobacteria
Duganella sp. GV038 [QUNP]
290877
290785
-
Ser
GCT
[ENA]
¡û
>W1810885838
QUNP01000005
Betaproteobacteria
Duganella sp. GV038 [QUNP]
290537
290445
-
Ser
GCT
[ENA]
¡û
>W1810886088
QUNU01000005
Betaproteobacteria
Duganella sp. GV067 [QUNU]
290877
290785
-
Ser
GCT
[ENA]
¡û
>W1810886089
QUNU01000005
Betaproteobacteria
Duganella sp. GV067 [QUNU]
290537
290445
-
Ser
GCT
[ENA]
¡û
>W1810908129
QVIL01000008
Betaproteobacteria
Duganella sp. BJB489 [QVIL]
357768
357860
+
Ser
GCT
[ENA]
¡û
>W1810908196
QVIM01000008
Betaproteobacteria
Duganella sp. BJB488 [QVIM]
357784
357876
+
Ser
GCT
[ENA]
¡û
>W1810908218
QVIN01000001
Betaproteobacteria
Duganella sp. BJB480 [QVIN]
387133
387225
+
Ser
GCT
[ENA]
¡û
>W1810908320
QVIO01000002
Betaproteobacteria
Duganella sp. BJB476 [QVIO]
272627
272535
-
Ser
GCT
[ENA]
¡û
>W1810908377
QVIP01000002
Betaproteobacteria
Duganella sp. BJB475 [QVIP]
553174
553266
+
Ser
GCT
[ENA]
¡û
>W1511355701
JRRH01000029
Betaproteobacteria
Janthinobacterium lividum MTR [JRRH]
70149
70241
+
Ser
GCT
[ENA]
¡û
>W1511588756
LBCO01000020
Betaproteobacteria
Janthinobacterium sp. KBS0711 [LBCO]
18252
18344
+
Ser
GCT
[ENA]
¡û
>W121031818
AHHB01000028
Betaproteobacteria
Janthinobacterium lividum PAMC 25724 [AHHB]
110186
110278
+
Ser
GCT
[ENA]
¡û
>W1610723416
LMDJ01000012
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
84000
83908
-
Ser
GCT
[ENA]
¡û
>W1610734118
LMLM01000002
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
509
417
-
Ser
GCT
[ENA]
¡û
>W1610737084
LMNW01000003
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
276492
276584
+
Ser
GCT
[ENA]
¡û
>W1610751272
LNCE01000004
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
16607
16699
+
Ser
GCT
[ENA]
¡û
>W1610781672
LOCQ01000057
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
244491
244399
-
Ser
GCT
[ENA]
¡û
>W1611056235
MAQB01000012
Betaproteobacteria
Janthinobacterium lividum [MAQB]
30538
30446
-
Ser
GCT
[ENA]
¡û
>W1710509366
FMXD01000005
Betaproteobacteria
Janthinobacterium sp. 551a [FMXD]
218509
218417
-
Ser
GCT
[ENA]
¡û
>W1710515857
FNCD01000004
Betaproteobacteria
Duganella sp. OV458 [FNCD]
261183
261275
+
Ser
GCT
[ENA]
¡û
>W1710517057
FNDA01000004
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
210503
210595
+
Ser
GCT
[ENA]
¡û
>W1710519307
FNEQ01000005
Betaproteobacteria
Duganella sp. OV510 [FNEQ]
199212
199120
-
Ser
GCT
[ENA]
¡û
>W1710522193
FNHA01000004
Betaproteobacteria
Janthinobacterium sp. OK676 [FNHA]
190010
190102
+
Ser
GCT
[ENA]
¡û
>W1710547590
FODC01000004
Betaproteobacteria
Duganella sp. CF517 [FODC]
379312
379404
+
Ser
GCT
[ENA]
¡û
>W1710547591
FODC01000004
Betaproteobacteria
Duganella sp. CF517 [FODC]
380467
380559
+
Ser
GCT
[ENA]
¡û
>W1710556763
FOKL01000007
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
199687
199779
+
Ser
GCT
[ENA]
¡û
>W1710557570
FOLD01000002
Betaproteobacteria
Massilia yuzhufengensis [FOLD]
43954
43862
-
Ser
GCT
[ENA]
¡û
>W1710568809
FOTW01000014
Betaproteobacteria
Rugamonas rubra [FOTW]
179160
179252
+
Ser
GCT
[ENA]
¡û
>W1710568810
FOTW01000014
Betaproteobacteria
Rugamonas rubra [FOTW]
183929
184021
+
Ser
GCT
[ENA]
¡û
>W1710578441
FPBO01000087
Betaproteobacteria
Pseudoduganella namucuonensis [FPBO]
3038
2946
-
Ser
GCT
[ENA]
¡û
>W1710581713
FPKH01000003
Betaproteobacteria
Janthinobacterium lividum [FPKH]
351091
350999
-
Ser
GCT
[ENA]
¡û
>W1710593023
FRCX01000007
Betaproteobacteria
Duganella sacchari [FRCX]
462250
462342
+
Ser
GCT
[ENA]
¡û
>W1710596888
FTMV01000015
Betaproteobacteria
Janthinobacterium sp. TND4EL3 [FTMV]
184280
184372
+
Ser
GCT
[ENA]
¡û
>W1710720649
LFKP01000008
Betaproteobacteria
Janthinobacterium lividum [LFKP]
1421992
1421900
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK