This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.126730 (44 seq.)
>W1710945951
LORR01000011
Gammaproteobacteria
Citrobacter koseri [LORR]
230691
230775
+
Tyr
GTA
[ENA]
¡û
>W1711048544
LRPS01000084
Gammaproteobacteria
Citrobacter koseri [LRPS]
34540
34624
+
Tyr
GTA
[ENA]
¡û
>W131247403
CASJ01000021
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Agona str. 35.H.08 [CASJ]
226727
226643
-
Tyr
GTA
[ENA]
¡û
>W131249662
CATW01000022
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Agona str. 30.H.04 [CATW]
226907
226823
-
Tyr
GTA
[ENA]
¡û
>C171130426
LT667500
Gammaproteobacteria
Buchnera aphidicola BCifornacula [LT667500]
33633
33552
-
Tyr
GTA
-
¡û
>WENV170543181
CXQP01001510
[CXQP] human gut metagenome genome assembly hD11, contig; ENVO:feces
1474
1558
+
Tyr
GTA
[ENA]
¢þ
>C181057079
CP022073
Gammaproteobacteria
Citrobacter koseri FDAARGOS_287 [CP022073]
3976459
3976375
-
Tyr
GTA
-
¡û
>C181083690
CP023527
Gammaproteobacteria
Citrobacter koseri FDAARGOS_393 [CP023527]
2271624
2271708
+
Tyr
GTA
-
¡û
>C181138292
CP026709
Gammaproteobacteria
Citrobacter koseri AR_0024 [CP026709]
2779217
2779301
+
Tyr
GTA
-
¡û
>C181139867
CP026768
Gammaproteobacteria
Shigella flexneri Y 93-3063 [CP026768]
1141608
1141692
+
Tyr
GTA
-
¡û
>C181164840
CP028374
Gammaproteobacteria
Candidatus Purcelliella pentastirinorum OLIH [CP028374]
356555
356638
+
Tyr
GTA
-
¡û
>W141828708
JREK01000048
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000181 [JREK]
7655
7739
+
Tyr
GTA
[ENA]
¡û
>W1910076835
BFKL01000033
Gammaproteobacteria
Escherichia coli HH-P006 [BFKL]
206823
206907
+
Tyr
GTA
[ENA]
¡û
>W1910114969
BGEE01000026
Gammaproteobacteria
Escherichia coli NS-P045 [BGEE]
56768
56684
-
Tyr
GTA
[ENA]
¡û
>W1910133812
BIBK01000021
Gammaproteobacteria
Escherichia coli 07-A137-A [BIBK]
207872
207956
+
Tyr
GTA
[ENA]
¡û
>W1910133939
BIBM01000011
Gammaproteobacteria
Escherichia coli 09-A139-A [BIBM]
749697
749781
+
Tyr
GTA
[ENA]
¡û
>W1910139828
BIEM01000041
Gammaproteobacteria
Escherichia coli 82-F63-A [BIEM]
63304
63388
+
Tyr
GTA
[ENA]
¡û
>C141001556
CP003547
Gammaproteobacteria
secondary endosymbiont of Heteropsylla cubana [CP003547]
1104952
1105036
+
Tyr
GTA
[Ensembl]
¡û
>W1910845965
NBCE01000119
Gammaproteobacteria
Escherichia coli Win2012_WWKa_OUT_33 [NBCE]
384
300
-
Tyr
GTA
[ENA]
¡û
>W1910951418
NJMU01000005
Gammaproteobacteria
Escherichia coli MOD1-EC289 [NJMU]
130454
130538
+
Tyr
GTA
[ENA]
¡û
>W1910951487
NJMV01000005
Gammaproteobacteria
Escherichia coli MOD1-EC288 [NJMV]
130454
130538
+
Tyr
GTA
[ENA]
¡û
>W1911028362
NLTE01000038
Gammaproteobacteria
Escherichia coli MOD1-EC5083 [NLTE]
27130
27214
+
Tyr
GTA
[ENA]
¡û
>W1911096655
NNYO01000006
Gammaproteobacteria
Escherichia coli MOD1-EC6170 [NNYO]
128218
128302
+
Tyr
GTA
[ENA]
¡û
>W1911167249
NQBV01000122
Gammaproteobacteria
Escherichia coli ECSW+06 [NQBV]
68121
68205
+
Tyr
GTA
[ENA]
¡û
>W1911167374
NQBX01000134
Gammaproteobacteria
Escherichia coli ECSW+08 [NQBX]
67818
67902
+
Tyr
GTA
[ENA]
¡û
>W1911189840
NQWJ01000115
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Hadar NCTR488 [NQWJ]
122
38
-
Tyr
GTA
[ENA]
¡û
>W1911277053
NTEU01000023
Gammaproteobacteria
Escherichia coli KCJK5106 [NTEU]
74795
74711
-
Tyr
GTA
[ENA]
¡û
>W1911277163
NTEV01000137
Gammaproteobacteria
Escherichia coli KCJK5108 [NTEV]
27968
28052
+
Tyr
GTA
[ENA]
¡û
>W1911277706
NTFC01000097
Gammaproteobacteria
Escherichia coli KCJK5158 [NTFC]
27968
28052
+
Tyr
GTA
[ENA]
¡û
>W1911277830
NTFD01000182
Gammaproteobacteria
Escherichia coli KCJK5161 [NTFD]
27968
28052
+
Tyr
GTA
[ENA]
¡û
>W1911277866
NTFE01000073
Gammaproteobacteria
Escherichia coli KCJK5162 [NTFE]
88531
88447
-
Tyr
GTA
[ENA]
¡û
>W1810250814
PQET01000098
Gammaproteobacteria
Escherichia coli ECPET3 [PQET]
45662
45746
+
Tyr
GTA
[ENA]
¡û
>W1810250913
PQEV01000081
Gammaproteobacteria
Escherichia coli ECPET13 [PQEV]
31250
31334
+
Tyr
GTA
[ENA]
¡û
>W1810306714
PTRL01000005
Gammaproteobacteria
Escherichia sp. MOD1-EC5433 [PTRL]
198822
198738
-
Tyr
GTA
[ENA]
¡û
>C11114167
CP002243
Gammaproteobacteria
Candidatus Moranella endobia PCIT [CP002243]
508389
508305
-
Tyr
GTA
[Ensembl]
¡û
>C121002374
CP002295
Gammaproteobacteria
Serratia symbiotica str. 'Cinara cedri' [CP002295]
1656385
1656301
-
Tyr
GTA
[Ensembl]
¡û
>C131009060
CP003881
Gammaproteobacteria
Candidatus Moranella endobia PCVAL [CP003881]
309342
309258
-
Tyr
GTA
[Ensembl]
¡û
>W1610444074
FJZU01000003
Gammaproteobacteria
Enterobacter ludwigii cloacae [FJZU]
59834
59750
-
Tyr
GTA
[ENA]
¡û
>W1610457698
FKHG01000003
Gammaproteobacteria
Enterobacter ludwigii cloacae [FKHG]
59824
59740
-
Tyr
GTA
[ENA]
¡û
>W1610483101
FLAJ01000001
Gammaproteobacteria
Klebsiella pneumoniae k1336 [FLAJ]
119400
119484
+
Tyr
GTA
[ENA]
¡û
>W1610801821
LORR01000011
Gammaproteobacteria
Citrobacter koseri [LORR]
230691
230775
+
Tyr
GTA
[ENA]
¡û
>W1610889673
LRPS01000084
Gammaproteobacteria
Citrobacter koseri [LRPS]
34540
34624
+
Tyr
GTA
[ENA]
¡û
>W1710443702
FJZU01000003
Gammaproteobacteria
Enterobacter ludwigii cloacae [FJZU]
59834
59750
-
Tyr
GTA
[ENA]
¡û
>W1710457326
FKHG01000003
Gammaproteobacteria
Enterobacter ludwigii cloacae [FKHG]
59824
59740
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK