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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127077 (21 seq.)
>A171000527
CP001399
Thermoproteota
Sulfolobus islandicus L.S.2.15 [CP001399]
1959694
1959620
-
Val
CAC
-
¡û
>A171000554
CP001400
Thermoproteota
Sulfolobus islandicus M.14.25 [CP001400]
1827613
1827539
-
Val
CAC
-
¡û
>A171000581
CP001401
Thermoproteota
Sulfolobus islandicus M.16.27 [CP001401]
1931636
1931562
-
Val
CAC
-
¡û
>A171000608
CP001402
Thermoproteota
Sulfolobus islandicus M.16.4 [CP001402]
1831874
1831800
-
Val
CAC
-
¡û
>A171000635
CP001403
Thermoproteota
Sulfolobus islandicus Y.G.57.14 [CP001403]
1897914
1897840
-
Val
CAC
-
¡û
>A171000651
CP001404
Thermoproteota
Sulfolobus islandicus Y.N.15.51 [CP001404]
727805
727879
+
Val
CAC
-
¡û
>A171001927
CP002425
Thermoproteota
Sulfolobus islandicus REY15A [CP002425]
1725511
1725437
-
Val
CAC
-
¡û
>A171001953
CP002426
Thermoproteota
Sulfolobus islandicus HVE10/4 [CP002426]
1861560
1861486
-
Val
CAC
-
¡û
>A171003448
CP003928
Thermoproteota
Sulfolobus islandicus LAL14/1 [CP003928]
1698303
1698229
-
Val
CAC
-
¡û
>WENV170668503
LAFT01000259
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
1153
1228
+
Val
CAC
[ENA]
¢þ
>W1911654409
QEFG01000037
Thermoproteota
Sulfolobus islandicus [QEFG]
4563
4489
-
Val
CAC
[ENA]
¡û
>W1610004553
AHJK01000001
Thermoproteota
Sulfolobus islandicus M.16.2 [AHJK]
1876082
1876008
-
Val
CAC
[ENA]
¡û
>W1610004583
AHJL01000005
Thermoproteota
Sulfolobus islandicus M.16.12 [AHJL]
914910
914836
-
Val
CAC
[ENA]
¡û
>W1610004612
AHJM01000003
Thermoproteota
Sulfolobus islandicus M.16.13 [AHJM]
982093
982019
-
Val
CAC
[ENA]
¡û
>W1610004640
AHJN01000003
Thermoproteota
Sulfolobus islandicus M.16.22 [AHJN]
914204
914130
-
Val
CAC
[ENA]
¡û
>W1610004668
AHJO01000001
Thermoproteota
Sulfolobus islandicus M.16.23 [AHJO]
1845562
1845488
-
Val
CAC
[ENA]
¡û
>W1610004698
AHJP01000004
Thermoproteota
Sulfolobus islandicus M.16.30 [AHJP]
955305
955231
-
Val
CAC
[ENA]
¡û
>W1610004726
AHJQ01000001
Thermoproteota
Sulfolobus islandicus M.16.40 [AHJQ]
1863442
1863368
-
Val
CAC
[ENA]
¡û
>W1610004755
AHJR01000001
Thermoproteota
Sulfolobus islandicus M.16.43 [AHJR]
1827066
1826992
-
Val
CAC
[ENA]
¡û
>W1610004785
AHJS01000002
Thermoproteota
Sulfolobus islandicus M.16.46 [AHJS]
1016087
1016013
-
Val
CAC
[ENA]
¡û
>W1610004813
AHJT01000001
Thermoproteota
Sulfolobus islandicus M.16.47 [AHJT]
1878240
1878166
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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